PDB
3OAX
Resolution
2.6 Å
Released
Jan. 19, 2011
Receptor
Rhodopsin
Class
A
Species
Bos taurus
Ligands
all-trans-retinal
beta-ionone
Function
Inverse agonist
Allosteric agonist
Reference
10.1016/J.BPJ.2010.08.003
all-trans-retinal beta-ionone

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Ligand Amino Acid Generic Number Segment Interaction Type
all-trans-retinal A117 3.32x32 TM3 hydrophobic
all-trans-retinal M207 5.42x43 TM5 hydrophobic
all-trans-retinal F212 5.47x47 TM5 hydrophobic
all-trans-retinal F261 6.44x44 TM6 hydrophobic
all-trans-retinal W265 6.48x48 TM6 hydrophobic
all-trans-retinal Y268 6.51x51 TM6 hydrophobic
all-trans-retinal A269 6.52x52 TM6 hydrophobic
beta-ionone P285 7.32x31 TM7 hydrophobic
beta-ionone I286 7.33x32 TM7 hydrophobic
beta-ionone F287 7.34x33 TM7 hydrophobic
all-trans-retinal A292 7.39x38 TM7 hydrophobic

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Snake plot — Download: PNG | SVG
ICL1 K K L R ICL1ECL1 Y F V F ECL1ICL2 P M S N F R F ICL2ECL2 W S R Y I P E G M Q C S C G I D Y Y T P H E E T ECL2ICL3 Q E ICL3ECL3 Q G S D F ECL3N-term M N G T E G P N F Y V P F S N K T G V V R S P F E A P Q Y Y L A N-termC-term C G K N P L G D D E A S T T V S K T E T S Q V A P A C-term E P W Q F S M L A A Y M F L L I M L G F P I N F L T L Y V T V Q H T P L N Y I L L N L A V A D L F M V F G G F T T T L Y T S L H G G P T G C N L E G F F A T L G G E I A L W S L V V L A I E R Y V V V C K G E N H A I M G V A F T W V M A L A C A A P P L V G N N E S F V I Y M F V V H F I I P L I V I F F C Y G Q L V F T V K E A A A Q Q S A T T Q K A E K E V T R M V I I M V I A F L I C W L P Y A G V A F Y I F T H G P I F M T I P A F F A K T S A V Y N P V I Y I M M N K Q M V T F R N C T L C
Helix box plot — Download: PNG | SVG F N I P F G L M I L L F M Y A A L M S F 1 L N L A V A D L F M V G F G F T T T L Y T 2 V V L S W L A I E G G L T A F F G E L N 3 A I M G V A F T W V M A L A C A A P P L 4 Y C F F I V I L P I I F H V V F M Y I V F 5 I I M V I A F L I C W L P Y A G V A F Y 6 V P N Y V A S T K A F F A P I T M F I 7

GPCRdb(A)
GPCRdb(A)
Rhodopsin
TM3
3x32 3.32x32 A117
TM5
5x43 5.42x43 M207
5x47 5.47x47 F212
TM6
6x44 6.44x44 F261
6x48 6.48x48 W265
6x51 6.51x51 Y268
6x52 6.52x52 A269
TM7
7x31 7.32x31 P285
7x32 7.33x32 I286
7x33 7.34x33 F287
7x38 7.39x38 A292