PDB
7DGE
Resolution
3.7 Å
Released
Sept. 22, 2021
Receptor
mGlu1
Class
C
Species
Homo sapiens
Ligands
Nanobody 43
quisqualate
Function
PAM
Agonist
Reference
10.1007/S13238-020-00808-5
Nanobody 43 quisqualate

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Ligand Amino Acid Generic Number Segment Interaction Type
Nanobody 43 Q35 N-term polar (hydrogen bond)
Nanobody 43 R36 N-term Van der Waals
Nanobody 43 S37 N-term Van der Waals
quisqualate Y74 N-term aromatic (edge-to-face)
quisqualate Y74 N-term Van der Waals
quisqualate Y74 N-term polar (hydrogen bond)
quisqualate Y74 N-term polar (hydrogen bond)
quisqualate W110 N-term hydrophobic
quisqualate W110 N-term Van der Waals
quisqualate G163 N-term Van der Waals
quisqualate G163 N-term polar (hydrogen bond with backbone)
quisqualate S164 N-term Van der Waals
quisqualate S165 N-term polar (hydrogen bond)
quisqualate S165 N-term polar (hydrogen bond)
quisqualate S165 N-term polar (hydrogen bond with backbone)
quisqualate S186 N-term Van der Waals
quisqualate S186 N-term polar (hydrogen bond)
quisqualate A187 N-term Van der Waals
quisqualate T188 N-term polar (hydrogen bond)
quisqualate T188 N-term polar (hydrogen bond with backbone)
quisqualate T188 N-term polar (hydrogen bond)
quisqualate Y236 N-term Van der Waals
quisqualate Y236 N-term hydrophobic
quisqualate E292 N-term Van der Waals
quisqualate G293 N-term polar (hydrogen bond with backbone)
quisqualate G293 N-term Van der Waals
quisqualate D318 N-term polar (charge-assisted hydrogen bond)
quisqualate G319 N-term Van der Waals
quisqualate R323 N-term polar (charge-assisted hydrogen bond)
Nanobody 43 N362 N-term Van der Waals
Nanobody 43 H363 N-term polar (hydrogen bond)
Nanobody 43 H363 N-term Van der Waals
Nanobody 43 R364 N-term Van der Waals
Nanobody 43 N365 N-term polar (hydrogen bond with backbone)
Nanobody 43 N365 N-term Van der Waals
Nanobody 43 P366 N-term polar (hydrogen bond with backbone)
Nanobody 43 P366 N-term Van der Waals
Nanobody 43 Q369 N-term polar (hydrogen bond)
Nanobody 43 Q369 N-term Van der Waals
Nanobody 43 E381 N-term Van der Waals
Nanobody 43 G382 N-term Van der Waals
Nanobody 43 G382 N-term polar (hydrogen bond with backbone)
Nanobody 43 F383 N-term Van der Waals
Nanobody 43 F383 N-term hydrophobic
Nanobody 43 P384 N-term Van der Waals
Nanobody 43 P384 N-term hydrophobic
Nanobody 43 Q385 N-term polar (hydrogen bond)
Nanobody 43 E386 N-term polar (charge-assisted hydrogen bond)
Nanobody 43 E386 N-term polar (hydrogen bond with backbone)
quisqualate K409 N-term Van der Waals

NGL is a WebGL based 3D viewer powered by MMTF.

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NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Snake plot — Download: PNG | SVG
ICL1 T R D P V V K S S ICL1ECL1 K P ECL1ICL2 A G S K K K I C T R K P R F M ICL2ECL2 P P M P I L S Y P S I K E V Y L I C N T ECL2ICL3 R N V P A N F N ICL3ECL3 N ECL3N-term M V G L L L F F F P A I F L E V S L L P R S P G R K V L L A G A S S Q R S V A R M D G D V I I G A L F S V H H Q P P A E K V P E R K C G E I R E Q Y G I Q R V E A M F H T L D K I N A D P V L L P N I T L G S E I R D S C W H S S V A L E Q S I E F I R D S L I S I R D E K D G I N R C L P D G Q S L P P G R T K K P I A G V I G P G S S S V A I Q V Q N L L Q L F D I P Q I A Y S A T S I D L S D K T L Y K Y F L R V V P S D T L Q A R A M L D I V K R Y N W T Y V S A V H T E G N Y G E S G M D A F K E L A A Q E G L C I A H S D K I Y S N A G E K S F D R L L R K L R E R L P K A R V V V C F C E G M T V R G L L S A M R R L G V V G E F S L I G S D G W A D R D E V I E G Y E V E A N G G I T I K L Q S P E V R S F D D Y F L K L R L D T N T R N P W F P E F W Q H R F Q C R L P G H L L E N P N F K R I C T G N E S L E E N Y V Q D S K M G F V I N A I Y A M A H G L Q N M H H A L C P G H V G L C D A M K P I D G S K L L D F L I K S S F I G V S G E E V W F D E K G D A P G R Y D I M N L Q Y T E A N R Y D Y V H V G T W H E G V L N I D D Y K I Q M N K S G V V R S V C S E P C L K G Q I K V I R K G E V S C C W I C T A C K E N E Y V Q D E F T C K A C D L G W W P N A D L T G C E P I P V R Y L E W S N N-termC-term D V V R M H V G D G K L P C R S N T F L N I F R R K K A G A G N A N S N G K S V S W S E P G G G Q V P K G Q H M W H R L S V H V K T N E T A C N Q T A V I K P L T K S Y Q G S G K S L T F S D T S T K T L Y N V E E E E D A Q P I R F S P P G S P S M V V H R R V P S A A T T P P L P S H L T A E E T P L F L A E P A L P K G L P P P L Q Q Q Q Q P P P Q Q K S L M D Q L Q G V V S N F S T A I P D F H A V L A G P G G P G N G L R S L Y P P P P P P Q H L Q M L P L Q L S T F G E E L V S P P A D D D D D S E R F K L L Q E Y V Y E H E R E G N T E E D E L E E E E E D L Q A A S K L T P D D S P A L T P P S P F R D S V A S G S S V P S S P V S E S V L C T P P N V S Y A S V I L R D Y K Q S S S T L C-term I E S I I A I A F S C L G I L V T L F V T L I F V L Y S R E L C Y I I L A G I F L G Y V C P F T L I A T T T S C Y L Q R L L V G L S S A M C Y S A L V T K T N R I A R I L S A W A Q V I I A S I L I S V Q L T L V V T L I I M E S N L G V V A P L G Y N G L L I M S C T Y Y A F K T E A K Y I A F T M Y T T C I I W L A F V P I Y F G S Y K I I T T C F A V S L S V T V A L G C M F T P K M Y I I I A K P E R A F T N V R S T S
Helix box plot — Download: PNG | SVG L T V L I G L C S F A I A I I S E I 1 Y I I L A G I F L G Y V C P F T L I A 2 T V L A S Y C M A S S L G V L L R Q L Y 3 Q V I I A S I L I S V Q L T L V V T L I 4 A Y Y T C S M I L L G N Y G L P A V V G 5 A F T M Y T T C I I W L A F V P I Y F G 6 G L A V T V S L S V A F C T T I I K Y 7

GPCRdb(A)
GPCRdb(C)
mGlu1 receptor