Structure information

CCR1

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

7VL9

SPECIES

Homo sapiens

RESOLUTION

2.600

PREFERRED CHAIN

R

REFERENCE

10.1038/S41589-021-00918-Z

PUBLICATION DATE

March 23, 2022

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
CCL15(26-92) Y18 N-term hydrophobic
CCL15(26-92) D20 N-term polar (charge-assisted hydrogen bond)
CCL15(26-92) A21 N-term hydrophobic
CCL15(26-92) A21 N-term Van der Waals
CCL15(26-92) P23 N-term Van der Waals
CCL15(26-92) P23 N-term hydrophobic
CCL15(26-92) C24 N-term Van der Waals
CCL15(26-92) Q25 N-term polar (hydrogen bond)
CCL15(26-92) Q25 N-term Van der Waals
CCL15(26-92) K26 1.24x24 TM1 polar (hydrogen bond with backbone)
CCL15(26-92) K26 1.24x24 TM1 Van der Waals
CCL15(26-92) R30 1.28x28 TM1 polar (charge-assisted hydrogen bond)
CCL15(26-92) Y41 1.39x39 TM1 aromatic (face-to-edge)
CCL15(26-92) Y41 1.39x39 TM1 Van der Waals
CCL15(26-92) T86 2.56x56 TM2 Van der Waals
CCL15(26-92) L87 2.57x57 TM2 hydrophobic
CCL15(26-92) W90 2.60x60 TM2 Van der Waals
CCL15(26-92) W90 2.60x60 TM2 aromatic (face-to-face)
CCL15(26-92) Y93 2.63x63 TM2 Van der Waals
CCL15(26-92) Y93 2.63x63 TM2 aromatic (edge-to-face)
CCL15(26-92) K94 2.64x64 TM2 Van der Waals
CCL15(26-92) D97 2.67x67 TM2 Van der Waals
CCL15(26-92) Y113 3.32x32 TM3 hydrophobic
CCL15(26-92) Y113 3.32x32 TM3 Van der Waals
CCL15(26-92) Q175 ECL2 Van der Waals
CCL15(26-92) Q175 ECL2 polar (hydrogen bond)
CCL15(26-92) E177 ECL2 Van der Waals
CCL15(26-92) F178 ECL2 Van der Waals
CCL15(26-92) F178 ECL2 hydrophobic
CCL15(26-92) S184 45.51x51 ECL2 polar (hydrogen bond)
CCL15(26-92) H186 ECL2 Van der Waals
CCL15(26-92) H186 ECL2 polar (hydrogen bond with backbone)
CCL15(26-92) F187 ECL2 Van der Waals
CCL15(26-92) F187 ECL2 polar (hydrogen bond with backbone)
CCL15(26-92) H189 ECL2 Van der Waals
CCL15(26-92) L192 5.31x32 TM5 Van der Waals
CCL15(26-92) L192 5.31x32 TM5 hydrophobic
CCL15(26-92) R193 5.32x33 TM5 polar (charge-assisted hydrogen bond)
CCL15(26-92) K196 5.35x36 TM5 polar (charge-assisted hydrogen bond)
CCL15(26-92) Q265 6.61x61 TM6 Van der Waals
CCL15(26-92) D266 ECL3 polar (charge-assisted hydrogen bond)
CCL15(26-92) C273 ECL3 Van der Waals
CCL15(26-92) D280 7.32x31 TM7 Van der Waals
CCL15(26-92) V283 7.35x34 TM7 hydrophobic
CCL15(26-92) V283 7.35x34 TM7 Van der Waals
CCL15(26-92) Q284 7.36x35 TM7 Van der Waals
CCL15(26-92) E287 7.39x38 TM7 polar (charge-assisted hydrogen bond)
CCL15(26-92) Y291 7.43x42 TM7 Van der Waals
CCL15(26-92) Y291 7.43x42 TM7 hydrophobic

Ligands

CCL15(26-92)

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Residue Diagrams

I N G V L G I V F V L S Y L P P L L Q A 1 L N L A I S D L L F L F T L P F W I D Y 2 L I I F F I E S Y L G T Y Y F G S L I K 3 G V I T S I I I W A L A I L A S M P G 4 Y C I I M V L L P L V L G F L N L K L A Q 5 F V I M I I F F L F W T P Y N L T I L I 6 V P N V C C H T Y A I V E T V Q V A L 7
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ICL1 K R L K ICL1ECL1 D W V F ECL1ICL2 A V F A L R A R ICL2ECL2 K T Q W E F T H H T C S L H F P H E ECL2ICL3 R P ICL3ECL3 T H ECL3N-term M E T P N T T E D Y D T T T E F D Y G D A T P C Q N-termC-term R V A V H L V K W L P F L S V D R L E R V S S T S P S T G E H E L S A G F C-term K V N E R A F G A Q L L P P L Y S L V F V I G L V G N I L V V L V L V Q Y N M T S I Y L L N L A I S D L L F L F T L P F W I D Y K L K D G D A M C K I L S G F Y Y T G L Y S E I F F I I L L T I D R Y L A I V H T V T F G V I T S I I I W A L A I L A S M P G L Y F S S L R E W K L F Q A L K L N L F G L V L P L L V M I I C Y T G I I K I L L R N E K K S K A V R L I F V I M I I F F L F W T P Y N L T I L I S V F Q D F L F E C E Q S R H L D L A V Q V T E V I A Y T H C C V N P V I Y A F V G E R L R Q F R K Y L F H R
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Residue Table


GPCRdb(A)
GPCRdb(A)
CCR1
TM1
1x24 1.24x24 K26
1x28 1.28x28 R30
1x39 1.39x39 Y41
TM2
2x56 2.56x56 T86
2x57 2.57x57 L87
2x60 2.60x60 W90
2x63 2.63x63 Y93
2x64 2.64x64 K94
2x67 2.67x67 D97
TM3
3x32 3.32x32 Y113
ECL2
45x51 45.51x51 S184
TM5
5x32 5.31x32 L192
5x33 5.32x33 R193
5x36 5.35x36 K196
TM6
6x61 6.61x61 Q265
TM7
7x31 7.32x31 D280
7x34 7.35x34 V283
7x35 7.36x35 Q284
7x38 7.39x38 E287
7x42 7.43x42 Y291