Structure information

CT receptor

PROTEIN CLASS

Class B1 (Secretin)

PDB CODE

8F2A

SPECIES

Homo sapiens

RESOLUTION

2.200

PREFERRED CHAIN

R

REFERENCE

10.1038/S41589-023-01393-4

PUBLICATION DATE

Aug. 2, 2023

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
Pramlintide analogue San385 D77 N-term Van der Waals
Pramlintide analogue San385 G78 N-term Van der Waals
Pramlintide analogue San385 W79 N-term aromatic (face-to-edge)
Pramlintide analogue San385 W79 N-term Van der Waals
Pramlintide analogue San385 D97 N-term Van der Waals
Pramlintide analogue San385 F99 N-term Van der Waals
Pramlintide analogue San385 P100 N-term Van der Waals
Pramlintide analogue San385 D101 N-term Van der Waals
Pramlintide analogue San385 F102 N-term Van der Waals
Pramlintide analogue San385 F102 N-term hydrophobic
Pramlintide analogue San385 D103 N-term polar (charge-assisted hydrogen bond)
Pramlintide analogue San385 P104 N-term Van der Waals
Pramlintide analogue San385 S105 N-term Van der Waals
Pramlintide analogue San385 H121 N-term polar (hydrogen bond)
Pramlintide analogue San385 H121 N-term polar (hydrogen bond)
Pramlintide analogue San385 E123 N-term polar (charge-assisted hydrogen bond)
Pramlintide analogue San385 R126 N-term polar (charge-assisted hydrogen bond)
Pramlintide analogue San385 W128 N-term polar (hydrogen bond)
Pramlintide analogue San385 W128 N-term polar (hydrogen bond)
Pramlintide analogue San385 S129 N-term Van der Waals
Pramlintide analogue San385 S129 N-term polar (hydrogen bond with backbone)
Pramlintide analogue San385 Y131 N-term Van der Waals
Pramlintide analogue San385 Y131 N-term hydrophobic
Pramlintide analogue San385 T132 1.23x23 TM1 Van der Waals
Pramlintide analogue San385 N135 1.26x26 TM1 polar (hydrogen bond)
Pramlintide analogue San385 N135 1.26x26 TM1 Van der Waals
Pramlintide analogue San385 K141 1.32x32 TM1 Van der Waals
Pramlintide analogue San385 L142 1.33x33 TM1 hydrophobic
Pramlintide analogue San385 L142 1.33x33 TM1 Van der Waals
Pramlintide analogue San385 A145 1.36x36 TM1 hydrophobic
Pramlintide analogue San385 A145 1.36x36 TM1 Van der Waals
Pramlintide analogue San385 Y146 1.37x37 TM1 polar (hydrogen bond)
Pramlintide analogue San385 Y146 1.37x37 TM1 Van der Waals
Pramlintide analogue San385 Y146 1.37x37 TM1 aromatic (face-to-edge)
Pramlintide analogue San385 L148 1.39x39 TM1 Van der Waals
Pramlintide analogue San385 L148 1.39x39 TM1 hydrophobic
Pramlintide analogue San385 Y149 1.40x40 TM1 Van der Waals
Pramlintide analogue San385 Y149 1.40x40 TM1 hydrophobic
Pramlintide analogue San385 Y150 1.41x41 TM1 hydrophobic
Pramlintide analogue San385 Y150 1.41x41 TM1 Van der Waals
Pramlintide analogue San385 V206 ECL1 polar (hydrogen bond with backbone)
Pramlintide analogue San385 V206 ECL1 Van der Waals
Pramlintide analogue San385 P207 ECL1 polar (hydrogen bond with backbone)
Pramlintide analogue San385 P207 ECL1 Van der Waals
Pramlintide analogue San385 G209 ECL1 Van der Waals
Pramlintide analogue San385 V212 ECL1 Van der Waals
Pramlintide analogue San385 V212 ECL1 hydrophobic
Pramlintide analogue San385 R213 ECL1 polar (charge-assisted hydrogen bond)
Pramlintide analogue San385 Q227 3.37x37 TM3 polar (hydrogen bond)
Pramlintide analogue San385 Q227 3.37x37 TM3 polar (hydrogen bond)
Pramlintide analogue San385 M230 3.40x40 TM3 Van der Waals
Pramlintide analogue San385 Y234 3.44x44 TM3 hydrophobic
Pramlintide analogue San385 Y234 3.44x44 TM3 Van der Waals
Pramlintide analogue San385 L291 45.52x52 ECL2 Van der Waals
Pramlintide analogue San385 L291 45.52x52 ECL2 polar (hydrogen bond with backbone)
Pramlintide analogue San385 S292 ECL2 Van der Waals
Pramlintide analogue San385 V293 ECL2 Van der Waals
Pramlintide analogue San385 V293 ECL2 polar (hydrogen bond with backbone)
Pramlintide analogue San385 E294 ECL2 polar (charge-assisted hydrogen bond)
Pramlintide analogue San385 Y299 5.37x38 TM5 polar (hydrogen bond)
Pramlintide analogue San385 Y299 5.37x38 TM5 Van der Waals
Pramlintide analogue San385 Y299 5.37x38 TM5 polar (hydrogen bond)
Pramlintide analogue San385 H302 5.40x40 TM5 polar (hydrogen bond)
Pramlintide analogue San385 H302 5.40x40 TM5 polar (hydrogen bond)
Pramlintide analogue San385 V305 5.43x43 TM5 Van der Waals
Pramlintide analogue San385 M306 5.44x44 TM5 hydrophobic
Pramlintide analogue San385 M306 5.44x44 TM5 Van der Waals
Pramlintide analogue San385 F356 6.53x53 TM6 Van der Waals
Pramlintide analogue San385 F356 6.53x53 TM6 hydrophobic
Pramlintide analogue San385 P360 ECL3 Van der Waals
Pramlintide analogue San385 P360 ECL3 polar (hydrogen bond with backbone)
Pramlintide analogue San385 W361 ECL3 polar (hydrogen bond)
Pramlintide analogue San385 R362 ECL3 polar (hydrogen bond with backbone)
Pramlintide analogue San385 R362 ECL3 Van der Waals
Pramlintide analogue San385 Y372 7.38x37 TM7 Van der Waals
Pramlintide analogue San385 H377 7.43x42 TM7 Van der Waals
Pramlintide analogue San385 I380 7.46x45 TM7 Van der Waals

Ligands

Pramlintide analogue San385

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Residue Diagrams

V L T F I S L S H G V I A L Y Y L V Y A 1 K N M F L T Y I L N S M I I I I H L V E 2 C L M W F Y N C A M M Y Q H F F H L I K 3 R L R W Y Y L G L W G F P L V P T T I H A 4 L F F F N V V L A A M V P G H I I Y L 5 M I L V P L L G I Q F V V F P W 6 T A V F F G Q F H I L S H M V Y D Y I 7
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ICL1 R S L G ICL1ECL1 V P N G E L V R R D ECL1ICL2 A V F T E K Q ICL2ECL2 N D N C W L S V E T H L ECL2ICL3 E ICL3ECL3 R P S ECL3N-term M R F T F T S R C L A L F L L L N H P T P I L P A F S N Q T Y P T I E P K P F L Y V V G R K K M M D A Q Y K C Y D R M Q Q L P A Y Q G E G P Y C N R T W D G W L C W D D T P A G V L S Y Q F C P D Y F P D F D P S E K V T K Y C D E K G V W F K H P E N N R T W S N Y N-termC-term P S N R S A R A A A A A A E A G D I P I Y I C H Q E L R N E P A N N Q G E E S A E I I P L N I I E Q E S S A C-term T M C N A F T P E K L K N A Y V L Y Y L A I V G H S L S I F T L V I S L G I F V F F C Q R V T L H K N M F L T Y I L N S M I I I I H L V E V P V S C K I L H F F H Q Y M M A C N Y F W M L C E G I Y L H T L I V V R L R W Y Y L L G W G F P L V P T T I H A I T R A V Y F L Y I I H G P V M A A L V V N F F F L L N I V R V L V T K M R E T H A E S H M Y L K A V K A T M I L V P L L G I Q F V V F P W N K M L G K I Y D Y V M H S L I H F Q G F F V A T I Y C F C N N E V K R F K I R W G V Q T T Q W A Q Q W N Q R R
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Residue Table


GPCRdb(A)
GPCRdb(B)
CT receptor
TM1
1x19 1.23x23 T132
1x22 1.26x26 N135
1x28 1.32x32 K141
1x29 1.33x33 L142
1x32 1.36x36 A145
1x33 1.37x37 Y146
1x35 1.39x39 L148
1x36 1.40x40 Y149
1x37 1.41x41 Y150
TM3
3x33 3.37x37 Q227
3x36 3.40x40 M230
3x40 3.44x44 Y234
ECL2
45x52 45.52x52 L291
TM5
5x42 5.37x38 Y299
5x44 5.40x40 H302
5x47 5.43x43 V305
5x48 5.44x44 M306
TM6
6x48 6.53x53 F356
TM7
7x33 7.38x37 Y372
7x38 7.43x42 H377
7x41 7.46x45 I380