PDB
8JPS
Resolution
3.7 Å
Released
July 31, 2024
Receptor
ACKR1
Class
A
Species
Homo sapiens
Ligand
CCL7
Function
Agonist
Reference
10.1016/J.CELL.2024.07.005

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Ligand Amino Acid Generic Number Segment Interaction Type
CCL7 E46 N-term polar (charge-assisted hydrogen bond)
CCL7 A48 N-term Van der Waals
CCL7 A48 N-term hydrophobic
CCL7 P50 N-term Van der Waals
CCL7 P50 N-term hydrophobic
CCL7 C51 N-term Van der Waals
CCL7 C51 N-term polar (hydrogen bond with backbone)
CCL7 H52 N-term Van der Waals
CCL7 S53 N-term polar (hydrogen bond)
CCL7 S53 N-term polar (hydrogen bond with backbone)
CCL7 S53 N-term Van der Waals
CCL7 D263 6.58x58 TM6 Van der Waals
CCL7 V266 6.61x61 TM6 Van der Waals
CCL7 V266 6.61x61 TM6 hydrophobic
CCL7 R267 6.62x62 TM6 polar (charge-assisted hydrogen bond)
CCL7 L273 ECL3 Van der Waals
CCL7 L273 ECL3 hydrophobic
CCL7 S274 ECL3 Van der Waals
CCL7 C276 7.25x24 TM7 hydrophobic
CCL7 C276 7.25x24 TM7 Van der Waals
CCL7 Q279 7.28x27 TM7 polar (hydrogen bond)

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Snake plot — Download: PNG | SVG
ICL1 L F R W Q L C P ICL1ECL1 P G L G S T R ECL1ICL2 G Q ICL2ECL2 G A S G G L C T L I Y S T E ECL2ICL3 K A L G M G ICL3ECL3 L L L L S ECL3N-term M G N C L H R A E L S P S T E N S S Q L D F E D V W N S S Y G V N D S F P D G D Y G A N L E A A A P C H S C N L L N-termC-term E G W S S H L D T L G S K S C-term D D S A L P F F I L T S V L G I L A S S T V L F M L F R P G W P V L A Q L A V G S A L F S I V V P V L A S S A L C S L G Y C V W Y G S A F A Q A L L L G C H A S L G H R L G A V P G L T L G L T V G I W G V A A L L T L P V T L A S L K A L Q A T H T V A C L A I F V L L P L G L F G A K G L K P G P W M N I L W A W F I F W W P H G V V L G L D F L V R S K T C L A Q Q A L D L L L N L A E A L A I L H C V A T P L L L A L F C H Q L L P P A T R T S L P L
Helix box plot — Download: PNG | SVG S S A L I G L V S T L I F F P L A S D D 1 A Q L A V G S A L F S I V V P V L A 2 C G L L L A Q A F A S G Y W V C Y G L S 3 T L G L T V G I W G V A A L L T L P V 4 F L G L P L L V F I A L C A V T H T A Q 5 M N I L W A W F I F W W P H G V V L G L 6 L P T A V C H L I A L A E A L N L L L 7

GPCRdb(A)
GPCRdb(A)
ACKR1
TM6
6x58 6.58x58 D263
6x61 6.61x61 V266
6x62 6.62x62 R267
TM7
7x24 7.25x24 C276
7x27 7.28x27 Q279