PDB
8X0F
Resolution
3.3 Å
Released
Nov. 6, 2024
Receptor
mGlu5
Class
C
Species
Homo sapiens
Ligands
quisqualate
VU-29
Function
Agonist
PAM
Reference
10.1038/S41467-024-55439-9
quisqualate VU-29

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Ligand Amino Acid Generic Number Segment Interaction Type
quisqualate Y64 N-term polar (hydrogen bond)
quisqualate Y64 N-term aromatic (edge-to-face)
quisqualate Y64 N-term polar (hydrogen bond)
quisqualate Y64 N-term Van der Waals
quisqualate W100 N-term aromatic (edge-to-face)
quisqualate W100 N-term Van der Waals
quisqualate G150 N-term Van der Waals
quisqualate S151 N-term Van der Waals
quisqualate S152 N-term polar (hydrogen bond)
quisqualate S173 N-term polar (hydrogen bond with backbone)
quisqualate S173 N-term Van der Waals
quisqualate T175 N-term Van der Waals
quisqualate T175 N-term polar (hydrogen bond)
quisqualate Y223 N-term hydrophobic
quisqualate Y223 N-term Van der Waals
quisqualate E279 N-term Van der Waals
quisqualate G280 N-term polar (hydrogen bond with backbone)
quisqualate G280 N-term Van der Waals
quisqualate D305 N-term polar (charge-assisted hydrogen bond)
quisqualate G306 N-term Van der Waals
quisqualate R310 N-term polar (charge-assisted hydrogen bond)
quisqualate K396 N-term Van der Waals
VU-29 P655 3.40x40 TM3 hydrophobic
VU-29 L744 5.44x44 TM5 hydrophobic
VU-29 I784 6.49x49 TM6 hydrophobic
VU-29 W785 6.50x50 TM6 aromatic (edge-to-face)
VU-29 F788 6.53x53 TM6 hydrophobic
VU-29 Y792 6.57x57 TM6 hydrophobic
VU-29 M802 7.32x33 TM7 hydrophobic
VU-29 V806 7.36x37 TM7 hydrophobic
VU-29 S809 7.39x40 TM7 polar (hydrogen bond)
VU-29 S809 7.39x40 TM7 Van der Waals
VU-29 L813 7.43x44 TM7 Van der Waals

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Snake plot — Download: PNG | SVG
ICL1 T R D P V V K S S ICL1ECL1 A K P ECL1ICL2 A G S K K K I C T K K P R F M ICL2ECL2 P P D I M H D Y P S I R E V Y L I C N T ECL2ICL3 R N V P A N F N ICL3ECL3 N ECL3N-term M V L L L I L S V L L L K E D V R G S A Q S S E R R V V A H M P G D I I I G A L F S V H H Q P T V D K V H E R K C G A V R E Q Y G I Q R V E A M L H T L E R I N S D P T L L P N I T L G C E I R D S C W H S A V A L E Q S I E F I R D S L I S S E E E E G L V R C V D G S S S S F R S K K P I V G V I G P G S S S V A I Q V Q N L L Q L F N I P Q I A Y S A T S M D L S D K T L F K Y F M R V V P S D A Q Q A R A M V D I V K R Y N W T Y V S A V H T E G N Y G E S G M E A F K D M S A K E G I C I A H S Y K I Y S N A G E Q S F D K L L K K L T S H L P K A R V V A C F C E G M T V R G L L M A M R R L G L A G E F L L L G S D G W A D R Y D V T D G Y Q R E A V G G I T I K L Q S P D V K W F D D Y Y L K L R P E T N H R N P W F Q E F W Q H R F Q C R L E G F P Q E N S K Y N K T C N S S L T L K T H H V Q D S K M G F V I N A I Y S M A Y G L H N M Q M S L C P G Y A G L C D A M K P I D G R K L L E S L M K T N F T G V S G D T I L F D E N G D S P G R Y E I M N F K E M G K D Y F D Y I N V G S W D N G E L K M D D D E V W S K K S N I I R S V C S E P C E K G Q I K V I R K G E V S C C W T C T P C K E N E Y V F D E Y T C K A C Q L G S W P T D D L T G C D L I P V Q Y L R W G D N-termC-term T V V R M H V G D G K S S S A A S R S S S L V N L W K R R G S S G E T L R Y K D R R L A Q H K S E I E C F T P K G S M G N G G R A T M S S S N G K S V T W A Q N E K S S R G Q H L W Q R L S I H I N K K E N P N Q T A V I K P F P K S T E S R G L G A G A G A G G S A G G V G A T G G A G C A G A G P G G P E S P D A G P K A L Y D V A E A E E H F P A P A R P R S P S P I S T L S H R A G S A S R T D D D V P S L H S E P V A R S S S S Q G S L M E Q I S S V V T R F T A N I S E L N S M M L S T A A P S P G V G A P L C S S Y L I P K E I Q L P T T M T T F A E I Q P L P A I E V T G G A Q P A A G A Q A A G D A A R E S P A A G P E A A A A K P D L E E L V A L T P P S P F R D S V D S G S T T P N S P V S E S A L C I P S S P K Y D T L I I R D Y T Q S S S S L C-term P E P I A A V V F A C L G L L A T L F V T V V F I I Y S R E L C Y I I L A G I C L G Y L C T F C L I K Q I Y C Y L Q R I G I G L S P A M S Y S A L V T K T N R I A R I L S A C A Q L V I A F I L I C I Q L G I I V A L F I M E T N L G V V T P L G Y N G L L I L S C T F Y A F K T E A K Y I A F T M Y T T C I I W L A F V P I Y F G S Y K I I T M C F S V S L S A T V A L G C M F V P K V Y I I L A K P E R A F T N V R S T S
Helix box plot — Download: PNG | SVG L T A L L G L C A F V V A A I P E P 1 Y I I L A G I C L G Y L C T F C L I 2 T V L A S Y S M A P S L G I G I R Q L Y 3 Q L V I A F I L I C I Q L G I I V A L F 4 A Y F T C S L I L L G N Y G L P T V V G 5 A F T M Y T T C I I W L A F V P I Y F G 6 G L A V T A S L S V S F C M T I I K Y 7

GPCRdb(A)
GPCRdb(C)
mGlu5 receptor
TM3
3x36 3.40x40 P655
TM5
5x44 5.44x44 L744
TM6
6x47 6.49x49 I784
6x48 6.50x50 W785
6x51 6.53x53 F788
6x55 6.57x57 Y792
TM7
7x38 7.32x33 M802
7x42 7.36x37 V806
7x45 7.39x40 S809
7x49 7.43x44 A813