apelin receptor - Gi1

GPCR CLASS (FAMILY)

Class A (Rhodopsin)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

R

G PROTEIN (FAMILY)

Gi/o

G PROTEIN SPECIES

Homo sapiens

PDB CODE

RESOLUTION

3.8 Å

REFERENCE

PUBLICATION DATE

July 27, 2022

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.

LIGAND INTERACTIONS

LIGANDS

apelin receptor early endogenous ligand - Agonist pubchem

ENDOGENOUS LIGANDS

apelin-13, apelin-17, apelin-36, Elabela/Toddler-21, [Pyr1]apelin-13, Elabela/Toddler-11, apelin receptor early endogenous ligand, Elabela/Toddler-32



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

, , , GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type
GPCR
Segment

AA

Number
Generic
number

segment

AA

Number
Generic
number
Hydrophobic ICL4 F 312 - G.H5 L 353 G.H5.25
Van-der-waals ICL4 F 312 - G.H5 L 353 G.H5.25
Hydrophobic TM5 F 232 5x69 G.H5 K 345 G.H5.17
Van-der-waals TM5 F 232 5x69 G.H5 K 345 G.H5.17
Hydrophobic ICL4 F 312 - G.H5 F 354 G.H5.26
Van-der-waals ICL2 R 139 - G.hns1 R 32 G.hns1.03
Hydrophobic H8 R 315 8x49 G.H5 F 354 G.H5.26
Van-der-waals H8 R 315 8x49 G.H5 F 354 G.H5.26
Hydrophobic TM5 H 231 5x68 G.H5 I 344 G.H5.16
Hydrophobic TM3 R 127 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 127 3x50 G.H5 L 353 G.H5.25
Hydrophobic TM3 I 131 3x54 G.H5 I 344 G.H5.16
Ionic ICL1 R 62 - G.H5 D 350 G.H5.22
Polar ICL1 R 62 - G.H5 D 350 G.H5.22
Van-der-waals TM6 K 242 6x29 G.H5 F 354 G.H5.26
Polar TM6 K 242 6x29 G.H5 L 353 G.H5.25
Hydrophobic ICL4 P 314 - G.H5 F 354 G.H5.26
Van-der-waals ICL4 P 314 - G.H5 F 354 G.H5.26
Hydrophobic TM3 I 131 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 131 3x54 G.H5 L 348 G.H5.20
Hydrophobic TM3 I 131 3x54 G.H5 C 351 G.H5.23
Polar TM6 R 245 6x32 G.H5 F 354 G.H5.26