ADGRF1 - Gq

GPCR CLASS (FAMILY)

Class B2 (Adhesion)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

R

G PROTEIN (FAMILY)

Gq/11

G PROTEIN SPECIES

Homo sapiens

PDB CODE

8G2Y

RESOLUTION

3.4 Å

REFERENCE

10.1038/S41467-023-38083-7

PUBLICATION DATE

May 10, 2023

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.

LIGAND INTERACTIONS

31 interactions (Click to see)

LIGANDS

[1-Myristoyl-glycerol-3-YL]phosphonylcholine - Agonist pubchem

ENDOGENOUS LIGANDS

No endogenous ligands available



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Van-der-waals ICL2 V 689 - G.H5 N 387 G.H5.19
Hydrophobic ICL2 F 690 - G.H5 C 379 G.H5.11
Polar TM2 R 623 2x46 G.H5 E 390 G.H5.22
Hydrophobic TM3 L 678 3x50 G.H5 Y 391 G.H5.23
Van-der-waals TM3 L 678 3x50 G.H5 Y 391 G.H5.23
Hydrophobic TM6 I 795 6x44 G.H5 L 393 G.H5.25
Van-der-waals TM6 I 795 6x44 G.H5 L 393 G.H5.25
Hydrophobic TM2 T 619 2x42 G.H5 Y 391 G.H5.23
Hydrophobic ICL2 F 690 - G.H5 I 383 G.H5.15
Van-der-waals ICL2 F 690 - G.H5 I 383 G.H5.15
Polar TM3 R 685 3x57 G.H5 N 387 G.H5.19
Hydrophobic TM3 R 685 3x57 G.H5 N 387 G.H5.19
Van-der-waals TM3 R 685 3x57 G.H5 N 387 G.H5.19
Hydrophobic TM3 I 686 3x58 G.H5 L 388 G.H5.20
Aromatic ICL2 F 690 - G.S1 H 41 G.S1.02
Hydrophobic ICL2 F 690 - G.S1 H 41 G.S1.02
Van-der-waals ICL2 F 690 - G.S1 H 41 G.S1.02
Polar TM2 S 620 2x43 G.H5 E 390 G.H5.22
Hydrophobic TM3 L 682 3x54 G.H5 Y 391 G.H5.23
Van-der-waals TM3 L 682 3x54 G.H5 Y 391 G.H5.23
Hydrophobic TM6 S 792 6x41 G.H5 L 393 G.H5.25
Van-der-waals TM6 S 792 6x41 G.H5 L 393 G.H5.25
Hydrophobic TM2 T 619 2x42 G.H5 E 390 G.H5.22
Hydrophobic TM5 L 769 5x61 G.H5 V 394 G.H5.26
Van-der-waals TM5 L 769 5x61 G.H5 V 394 G.H5.26
Hydrophobic TM3 L 681 3x53 G.H5 Y 391 G.H5.23
Van-der-waals TM3 L 681 3x53 G.H5 Y 391 G.H5.23
Hydrophobic ICL2 F 690 - G.S3 V 217 G.S3.01
Van-der-waals ICL2 F 690 - G.S3 V 217 G.S3.01
Hydrophobic ICL2 V 689 - G.H5 K 380 G.H5.12
Van-der-waals ICL2 V 689 - G.H5 K 380 G.H5.12
Hydrophobic TM3 I 686 3x58 G.H5 L 384 G.H5.16
Van-der-waals TM3 I 686 3x58 G.H5 L 384 G.H5.16
Hydrophobic TM3 R 685 3x57 G.H5 Y 391 G.H5.23
Aromatic ICL2 H 692 - G.S1 H 41 G.S1.02
Hydrophobic ICL2 H 692 - G.S1 H 41 G.S1.02
Van-der-waals ICL2 H 692 - G.S1 H 41 G.S1.02
Hydrophobic ICL2 F 690 - G.H5 K 380 G.H5.12
Van-der-waals ICL2 F 690 - G.H5 K 380 G.H5.12
Hydrophobic TM5 V 765 5x57 G.H5 L 393 G.H5.25
Van-der-waals TM5 V 765 5x57 G.H5 L 393 G.H5.25
Hydrophobic TM6 L 796 6x45 G.H5 L 393 G.H5.25
Van-der-waals TM6 L 796 6x45 G.H5 L 393 G.H5.25
Hydrophobic TM5 L 769 5x61 G.H5 L 393 G.H5.25
Van-der-waals TM5 L 769 5x61 G.H5 L 393 G.H5.25
Polar H8 D 842 8x47 G.H5 N 392 G.H5.24
Hydrophobic H8 D 842 8x47 G.H5 N 392 G.H5.24
Van-der-waals H8 D 842 8x47 G.H5 N 392 G.H5.24
Aromatic ICL2 F 690 - G.H5 F 376 G.H5.08
Hydrophobic ICL2 F 690 - G.H5 F 376 G.H5.08
Van-der-waals ICL2 F 690 - G.H5 F 376 G.H5.08
Hydrophobic ICL2 V 689 - G.H5 I 383 G.H5.15
Van-der-waals ICL2 V 689 - G.H5 I 383 G.H5.15
Hydrophobic ICL2 H 692 - G.hns1 R 38 G.hns1.02
Van-der-waals ICL2 H 692 - G.hns1 R 38 G.hns1.02
Hydrophobic TM5 L 769 5x61 G.H5 L 388 G.H5.20
Van-der-waals TM5 L 769 5x61 G.H5 L 388 G.H5.20
Aromatic TM2 R 623 2x46 G.H5 Y 391 G.H5.23
Hydrophobic TM2 R 623 2x46 G.H5 Y 391 G.H5.23
Van-der-waals TM2 R 623 2x46 G.H5 Y 391 G.H5.23
Hydrophobic TM6 I 795 6x44 G.H5 N 392 G.H5.24