G11 - ADGRE4P complex model

GPCR CLASS (FAMILY)

B2 (Adhesion)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gq/11

DATE

2023-09-15

3D VIEW

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Tertiary structure confidence

Chain pLDDT score avg
ADGRE4P 87.9
subunit alpha-11 88.7
Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.7
PAE mean: 12.2


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction definitions:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM5 L 370 5x68 G.H5 K 345 G.H5.12
Polar TM3 T 281 3x57 G.H5 E 355 G.H5.22
Hydrophobic TM3 T 281 3x57 G.H5 E 355 G.H5.22
Van-der-waals TM3 T 281 3x57 G.H5 E 355 G.H5.22
Hydrophobic ICL3 I 377 - G.H5 L 349 G.H5.16
Hydrophobic TM6 M 383 6x38 G.H5 V 359 G.H5.26
Polar TM3 L 278 3x54 G.H5 Y 356 G.H5.23
Hydrophobic TM3 L 278 3x54 G.H5 Y 356 G.H5.23
Van-der-waals TM3 L 278 3x54 G.H5 Y 356 G.H5.23
Hydrophobic TM3 T 281 3x57 G.H5 Y 356 G.H5.23
Van-der-waals TM3 T 281 3x57 G.H5 Y 356 G.H5.23
Hydrophobic ICL3 V 374 - G.H5 A 342 G.H5.09
Polar ICL2 N 289 - G.hns1 R 38 G.hns1.03
Hydrophobic TM3 T 281 3x57 G.H5 N 352 G.H5.19
Hydrophobic TM5 K 366 5x64 G.H5 L 349 G.H5.16
Polar ICL3 T 376 - G.H5 Q 350 G.H5.17
Van-der-waals ICL3 T 376 - G.H5 Q 350 G.H5.17
Polar TM2 N 220 2x44 G.H5 E 355 G.H5.22
Polar TM3 E 274 3x50 G.H5 Y 356 G.H5.23
Van-der-waals TM3 E 274 3x50 G.H5 Y 356 G.H5.23
Hydrophobic ICL2 L 285 - G.H5 I 348 G.H5.15
Hydrophobic ICL3 I 377 - G.H5 L 353 G.H5.20
Hydrophobic TM6 M 383 6x38 G.H5 L 358 G.H5.25
Van-der-waals TM6 M 383 6x38 G.H5 L 358 G.H5.25
Hydrophobic TM3 L 278 3x54 G.H5 L 358 G.H5.25
Hydrophobic ICL3 I 377 - G.H5 Q 350 G.H5.17
Van-der-waals ICL3 I 377 - G.H5 Q 350 G.H5.17
Hydrophobic TM6 K 386 6x41 G.H5 L 358 G.H5.25
Van-der-waals TM6 K 386 6x41 G.H5 L 358 G.H5.25
Hydrophobic ICL3 I 377 - G.H5 D 346 G.H5.13
Hydrophobic TM6 A 387 6x42 G.H5 L 358 G.H5.25
Polar H8 N 439 8x47 G.H5 N 357 G.H5.24
Hydrophobic H8 N 439 8x47 G.H5 N 357 G.H5.24
Van-der-waals H8 N 439 8x47 G.H5 N 357 G.H5.24
Hydrophobic ICL3 V 374 - G.H5 A 343 G.H5.10
Polar TM5 S 369 5x67 G.H5 K 345 G.H5.12
Hydrophobic TM5 S 369 5x67 G.H5 K 345 G.H5.12
Van-der-waals TM5 S 369 5x67 G.H5 K 345 G.H5.12
Hydrophobic TM5 L 370 5x68 G.H5 D 346 G.H5.13
Van-der-waals TM5 L 370 5x68 G.H5 D 346 G.H5.13
Polar ICL2 N 289 - G.hns1 R 37 G.hns1.02
Hydrophobic ICL2 N 289 - G.hns1 R 37 G.hns1.02
Van-der-waals ICL2 N 289 - G.hns1 R 37 G.hns1.02
Hydrophobic TM5 L 363 5x61 G.H5 L 353 G.H5.20
Van-der-waals TM5 L 363 5x61 G.H5 L 353 G.H5.20
Ionic H8 R 440 8x48 G.h4s6 D 321 G.h4s6.12
Polar H8 R 440 8x48 G.h4s6 D 321 G.h4s6.12
Hydrophobic H8 R 440 8x48 G.h4s6 D 321 G.h4s6.12
Van-der-waals H8 R 440 8x48 G.h4s6 D 321 G.h4s6.12
Polar TM3 H 277 3x53 G.H5 Y 356 G.H5.23
Aromatic TM3 H 277 3x53 G.H5 Y 356 G.H5.23
Hydrophobic TM3 H 277 3x53 G.H5 Y 356 G.H5.23
Van-der-waals TM3 H 277 3x53 G.H5 Y 356 G.H5.23
Polar ICL2 T 293 - G.H5 E 355 G.H5.22
Hydrophobic ICL2 T 293 - G.H5 E 355 G.H5.22
Van-der-waals ICL2 T 293 - G.H5 E 355 G.H5.22
Hydrophobic ICL2 Y 290 - G.H5 N 352 G.H5.19
Van-der-waals ICL2 Y 290 - G.H5 N 352 G.H5.19
Hydrophobic ICL2 L 285 - G.H5 N 352 G.H5.19
Van-der-waals ICL2 L 285 - G.H5 N 352 G.H5.19
Polar TM6 K 386 6x41 G.H5 V 359 G.H5.26
Van-der-waals TM6 K 386 6x41 G.H5 V 359 G.H5.26
Van-der-waals TM2 S 222 2x46 G.H5 Y 356 G.H5.23
Hydrophobic ICL3 T 376 - G.h4s6 I 323 G.h4s6.20
Van-der-waals ICL3 T 376 - G.h4s6 I 323 G.h4s6.20
Hydrophobic ICL2 Y 290 - G.S1 L 40 G.S1.02
Hydrophobic TM5 L 370 5x68 G.H5 L 349 G.H5.16
Van-der-waals TM5 L 370 5x68 G.H5 L 349 G.H5.16
Polar TM7 H 435 7x57 G.H5 N 357 G.H5.24
Van-der-waals TM7 H 435 7x57 G.H5 N 357 G.H5.24
Hydrophobic ICL3 T 376 - G.S6 Y 325 G.S6.02
Hydrophobic ICL3 N 371 - G.H5 A 342 G.H5.09
Polar TM7 V 434 7x56 G.H5 N 357 G.H5.24
Van-der-waals TM7 V 434 7x56 G.H5 N 357 G.H5.24
Polar H8 R 440 8x48 G.h4s6 S 320 G.h4s6.11
Hydrophobic H8 R 440 8x48 G.h4s6 S 320 G.h4s6.11
Van-der-waals H8 R 440 8x48 G.h4s6 S 320 G.h4s6.11
Hydrophobic ICL2 R 295 - G.hns1 R 37 G.hns1.02
Van-der-waals ICL2 R 295 - G.hns1 R 37 G.hns1.02
Hydrophobic ICL2 A 288 - G.S3 I 199 G.S3.01
Hydrophobic TM6 M 383 6x38 G.H5 L 353 G.H5.20
Hydrophobic ICL2 A 288 - G.hns1 R 37 G.hns1.02
Van-der-waals ICL2 A 288 - G.hns1 R 37 G.hns1.02
Hydrophobic ICL2 Y 290 - G.H5 I 348 G.H5.15
Van-der-waals ICL2 Y 290 - G.H5 I 348 G.H5.15
Hydrophobic TM5 L 363 5x61 G.H5 L 358 G.H5.25
Polar TM6 K 386 6x41 G.H5 N 357 G.H5.24
Hydrophobic TM6 K 386 6x41 G.H5 N 357 G.H5.24
Van-der-waals TM6 K 386 6x41 G.H5 N 357 G.H5.24
Hydrophobic ICL3 V 374 - G.H5 F 339 G.H5.06
Van-der-waals ICL3 V 374 - G.H5 F 339 G.H5.06
Polar ICL3 S 375 - G.H5 D 346 G.H5.13
Hydrophobic ICL3 S 375 - G.H5 D 346 G.H5.13
Van-der-waals ICL3 S 375 - G.H5 D 346 G.H5.13
Ionic TM3 H 277 3x53 G.H5 E 355 G.H5.22
Hydrophobic TM5 L 367 5x65 G.H5 L 349 G.H5.16
Polar ICL3 T 376 - G.H5 D 346 G.H5.13
Van-der-waals ICL3 T 376 - G.H5 D 346 G.H5.13
Hydrophobic ICL3 V 374 - G.S6 Y 325 G.S6.02
Van-der-waals ICL3 V 374 - G.S6 Y 325 G.S6.02
Polar ICL2 S 292 - G.hns1 R 37 G.hns1.02
Hydrophobic ICL2 S 292 - G.hns1 R 37 G.hns1.02
Van-der-waals ICL2 S 292 - G.hns1 R 37 G.hns1.02
Hydrophobic ICL2 L 285 - G.H5 L 349 G.H5.16
Van-der-waals ICL2 L 285 - G.H5 L 349 G.H5.16