G11 - ADGRG6 complex model

GPCR CLASS (FAMILY)

B2 (Adhesion)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gq/11

DATE

2023-09-15

3D VIEW

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Tertiary structure confidence

Chain pLDDT score avg
ADGRG6 73.5
subunit alpha-11 89.5
Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 11.3


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction definitions:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL2 F 963 - G.S1 L 40 G.S1.02
Van-der-waals ICL2 F 963 - G.S1 L 40 G.S1.02
Aromatic C-term W 1142 - G.H3 W 263 G.H3.17
Hydrophobic C-term W 1142 - G.H3 W 263 G.H3.17
Van-der-waals C-term W 1142 - G.H3 W 263 G.H3.17
Polar TM7 M 1117 7x60 G.H5 N 357 G.H5.24
Hydrophobic TM7 M 1117 7x60 G.H5 N 357 G.H5.24
Van-der-waals TM7 M 1117 7x60 G.H5 N 357 G.H5.24
Polar TM2 Y 896 2x45 G.hns1 R 37 G.hns1.02
Aromatic TM2 Y 896 2x45 G.hns1 R 37 G.hns1.02
Van-der-waals TM2 Y 896 2x45 G.hns1 R 37 G.hns1.02
Polar TM3 E 951 3x50 G.H5 Y 356 G.H5.23
Hydrophobic TM3 E 951 3x50 G.H5 Y 356 G.H5.23
Van-der-waals TM3 E 951 3x50 G.H5 Y 356 G.H5.23
Polar TM3 H 954 3x53 G.H5 Y 356 G.H5.23
Hydrophobic TM3 H 954 3x53 G.H5 Y 356 G.H5.23
Van-der-waals TM3 H 954 3x53 G.H5 Y 356 G.H5.23
Hydrophobic TM5 I 1047 5x61 G.H5 L 358 G.H5.25
Aromatic ICL2 F 963 - G.H5 F 341 G.H5.08
Hydrophobic ICL2 F 963 - G.H5 F 341 G.H5.08
Van-der-waals ICL2 F 963 - G.H5 F 341 G.H5.08
Hydrophobic H8 K 1118 8x47 G.H5 N 357 G.H5.24
Polar H8 K 1118 8x47 G.H5 E 355 G.H5.22
Hydrophobic H8 K 1118 8x47 G.H5 E 355 G.H5.22
Van-der-waals H8 K 1118 8x47 G.H5 E 355 G.H5.22
Polar TM3 A 958 3x57 G.H5 N 352 G.H5.19
Hydrophobic TM3 A 958 3x57 G.H5 N 352 G.H5.19
Van-der-waals TM3 A 958 3x57 G.H5 N 352 G.H5.19
Hydrophobic TM2 P 897 2x46 G.H5 E 355 G.H5.22
Van-der-waals TM2 P 897 2x46 G.H5 E 355 G.H5.22
Hydrophobic TM3 L 959 3x58 G.H5 L 349 G.H5.16
Van-der-waals TM3 L 959 3x58 G.H5 L 349 G.H5.16
Hydrophobic TM3 L 959 3x58 G.H5 L 353 G.H5.20
Polar TM7 H 1114 7x57 G.H5 Y 356 G.H5.23
Hydrophobic TM3 L 959 3x58 G.H5 N 352 G.H5.19
Van-der-waals TM3 L 959 3x58 G.H5 N 352 G.H5.19
Polar TM5 R 1054 5x68 G.h4s6 D 321 G.h4s6.12
Hydrophobic ICL2 F 963 - G.H5 V 344 G.H5.11
Hydrophobic TM6 R 1065 6x37 G.H5 V 359 G.H5.26
Van-der-waals TM6 R 1065 6x37 G.H5 V 359 G.H5.26
Polar TM6 R 1068 6x40 G.H5 N 357 G.H5.24
Hydrophobic TM6 R 1068 6x40 G.H5 N 357 G.H5.24
Van-der-waals TM6 R 1068 6x40 G.H5 N 357 G.H5.24
Hydrophobic ICL2 F 963 - G.S3 I 199 G.S3.01
Van-der-waals ICL2 F 963 - G.S3 I 199 G.S3.01
Hydrophobic TM6 L 1076 6x48 G.H5 Y 356 G.H5.23
Hydrophobic C-term W 1142 - G.H3 Y 261 G.H3.15
Polar ICL2 N 964 - G.s2s3 E 197 G.s2s3.01
Van-der-waals ICL2 N 964 - G.s2s3 E 197 G.s2s3.01
Hydrophobic ICL2 V 962 - G.H5 L 349 G.H5.16
Ionic TM5 R 1050 5x64 G.H5 D 346 G.H5.13
Polar TM5 R 1050 5x64 G.H5 D 346 G.H5.13
Hydrophobic TM5 R 1050 5x64 G.H5 D 346 G.H5.13
Van-der-waals TM5 R 1050 5x64 G.H5 D 346 G.H5.13
Polar TM7 F 1113 7x56 G.H5 N 357 G.H5.24
Van-der-waals TM7 F 1113 7x56 G.H5 N 357 G.H5.24
Hydrophobic TM6 L 1073 6x45 G.H5 L 358 G.H5.25
Hydrophobic ICL2 V 962 - G.H5 I 348 G.H5.15
Van-der-waals ICL2 V 962 - G.H5 I 348 G.H5.15
Hydrophobic ICL2 F 963 - G.H5 K 345 G.H5.12
Van-der-waals ICL2 F 963 - G.H5 K 345 G.H5.12
Hydrophobic ICL2 V 962 - G.H5 K 345 G.H5.12
Hydrophobic TM5 R 1050 5x64 G.H5 L 353 G.H5.20
Van-der-waals TM5 R 1050 5x64 G.H5 L 353 G.H5.20
Polar ICL2 N 964 - G.s2s3 N 198 G.s2s3.02
Hydrophobic ICL2 N 964 - G.s2s3 N 198 G.s2s3.02
Van-der-waals ICL2 N 964 - G.s2s3 N 198 G.s2s3.02
Polar TM5 R 1050 5x64 G.H5 L 349 G.H5.16
Hydrophobic TM5 R 1050 5x64 G.H5 L 349 G.H5.16
Van-der-waals TM5 R 1050 5x64 G.H5 L 349 G.H5.16
Polar TM5 R 1054 5x68 G.H5 Q 350 G.H5.17
Hydrophobic TM5 R 1054 5x68 G.H5 Q 350 G.H5.17
Van-der-waals TM5 R 1054 5x68 G.H5 Q 350 G.H5.17
Hydrophobic TM6 S 1072 6x44 G.H5 L 358 G.H5.25
Polar TM5 R 1050 5x64 G.H5 Q 350 G.H5.17
Hydrophobic TM5 R 1050 5x64 G.H5 Q 350 G.H5.17
Van-der-waals TM5 R 1050 5x64 G.H5 Q 350 G.H5.17
Polar TM3 M 955 3x54 G.H5 Y 356 G.H5.23
Hydrophobic TM3 M 955 3x54 G.H5 Y 356 G.H5.23
Van-der-waals TM3 M 955 3x54 G.H5 Y 356 G.H5.23
Polar TM6 S 1069 6x41 G.H5 L 358 G.H5.25
Hydrophobic TM6 S 1069 6x41 G.H5 L 358 G.H5.25
Van-der-waals TM6 S 1069 6x41 G.H5 L 358 G.H5.25
Hydrophobic TM5 V 1043 5x57 G.H5 L 358 G.H5.25
Hydrophobic TM2 D 895 2x44 G.H5 E 355 G.H5.22
Van-der-waals TM2 D 895 2x44 G.H5 E 355 G.H5.22
Polar C-term W 1142 - G.H3 P 262 G.H3.16
Hydrophobic C-term W 1142 - G.H3 P 262 G.H3.16
Van-der-waals C-term W 1142 - G.H3 P 262 G.H3.16
Hydrophobic ICL2 Y 966 - G.hns1 R 37 G.hns1.02
Van-der-waals ICL2 Y 966 - G.hns1 R 37 G.hns1.02
Ionic ICL3 R 1057 - G.h4s6 D 321 G.h4s6.12
Polar ICL3 R 1057 - G.h4s6 D 321 G.h4s6.12
Van-der-waals ICL3 R 1057 - G.h4s6 D 321 G.h4s6.12
Hydrophobic ICL2 N 964 - G.S3 I 199 G.S3.01
Van-der-waals ICL2 N 964 - G.S3 I 199 G.S3.01
Hydrophobic ICL2 Y 966 - G.HN R 34 G.HN.52
Van-der-waals ICL2 Y 966 - G.HN R 34 G.HN.52
Hydrophobic ICL2 Y 966 - G.hns1 R 38 G.hns1.03
Hydrophobic TM5 R 1054 5x68 G.h4s6 I 323 G.h4s6.20
Van-der-waals TM5 R 1054 5x68 G.h4s6 I 323 G.h4s6.20
Hydrophobic ICL2 F 963 - G.S3 F 201 G.S3.03
Hydrophobic ICL2 F 963 - G.H5 I 348 G.H5.15
Van-der-waals ICL2 F 963 - G.H5 I 348 G.H5.15
Hydrophobic ICL2 R 968 - G.HN R 34 G.HN.52
Hydrophobic TM2 P 897 2x46 G.H5 Y 356 G.H5.23
Van-der-waals TM2 P 897 2x46 G.H5 Y 356 G.H5.23
Hydrophobic TM5 I 1047 5x61 G.H5 L 353 G.H5.20