Go - GPR52 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 79.4

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.5
PAE mean: 17.3


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar TM3 R 139 3x50 G.H5 G 350 G.H5.22
Hydrophobic ICL2 L 147 34x51 G.H5 I 343 G.H5.15
Van-der-waals ICL2 L 147 34x51 G.H5 I 343 G.H5.15
Hydrophobic TM5 I 226 5x62 G.H5 L 353 G.H5.25
Van-der-waals TM5 I 226 5x62 G.H5 L 353 G.H5.25
Hydrophobic TM5 H 233 5x69 G.H5 A 345 G.H5.17
Hydrophobic TM5 I 237 5x73 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM5 I 237 5x73 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 A 264 6x34 G.H5 C 351 G.H5.23
Van-der-waals TM6 A 264 6x34 G.H5 C 351 G.H5.23
Polar TM5 T 234 5x70 G.H5 Y 354 G.H5.26
Hydrophobic TM5 T 234 5x70 G.H5 Y 354 G.H5.26
Van-der-waals TM5 T 234 5x70 G.H5 Y 354 G.H5.26
Polar TM6 A 264 6x34 G.H5 G 350 G.H5.22
Hydrophobic TM6 A 264 6x34 G.H5 G 350 G.H5.22
Van-der-waals TM6 A 264 6x34 G.H5 G 350 G.H5.22
Hydrophobic ICL2 P 146 34x50 G.H5 I 343 G.H5.15
Van-der-waals ICL2 P 146 34x50 G.H5 I 343 G.H5.15
Hydrophobic ICL2 Q 151 34x55 G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 Q 151 34x55 G.hns1 K 32 G.hns1.03
Hydrophobic TM5 F 244 5x80 G.H4 Q 305 G.H4.12
Van-der-waals TM5 F 244 5x80 G.H4 Q 305 G.H4.12
Polar TM6 M 265 6x35 G.H5 C 351 G.H5.23
Ionic TM5 H 233 5x69 G.H5 D 341 G.H5.13
Polar TM5 H 233 5x69 G.H5 D 341 G.H5.13
Hydrophobic TM5 H 233 5x69 G.H5 D 341 G.H5.13
Van-der-waals TM5 H 233 5x69 G.H5 D 341 G.H5.13
Van-der-waals ICL2 P 146 34x50 G.H5 N 347 G.H5.19
Polar TM6 R 261 6x31 G.H5 R 349 G.H5.21
Hydrophobic TM6 R 261 6x31 G.H5 R 349 G.H5.21
Van-der-waals TM6 R 261 6x31 G.H5 R 349 G.H5.21
Hydrophobic TM5 F 244 5x80 G.H4 E 309 G.H4.16
Van-der-waals TM5 F 244 5x80 G.H4 E 309 G.H4.16
Hydrophobic TM5 H 233 5x69 G.H5 L 348 G.H5.20
Ionic TM5 R 240 5x76 G.H5 D 341 G.H5.13
Polar TM5 R 240 5x76 G.H5 D 341 G.H5.13
Van-der-waals TM5 R 240 5x76 G.H5 D 341 G.H5.13
Polar TM3 A 142 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 142 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 142 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 I 143 3x54 G.H5 N 347 G.H5.19
Polar TM6 M 265 6x35 G.H5 G 352 G.H5.24
Hydrophobic TM6 M 265 6x35 G.H5 G 352 G.H5.24
Van-der-waals TM6 M 265 6x35 G.H5 G 352 G.H5.24
Hydrophobic ICL2 L 147 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 L 147 34x51 G.S3 L 195 G.S3.01
Hydrophobic TM3 I 143 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 143 3x54 G.H5 L 348 G.H5.20
Hydrophobic TM5 H 233 5x69 G.H5 I 344 G.H5.16
Hydrophobic TM5 C 230 5x66 G.H5 L 348 G.H5.20
Hydrophobic ICL2 P 146 34x50 G.H5 I 344 G.H5.16
Polar ICL2 N 150 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 N 150 34x54 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 N 150 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 L 147 34x51 G.H5 F 336 G.H5.08
Van-der-waals ICL2 L 147 34x51 G.H5 F 336 G.H5.08
Hydrophobic TM5 F 227 5x63 G.H5 L 353 G.H5.25
Van-der-waals TM5 F 227 5x63 G.H5 L 353 G.H5.25
Polar TM5 R 241 5x77 G.h4s6 P 315 G.h4s6.09
Hydrophobic TM3 I 143 3x54 G.H5 L 353 G.H5.25
Polar TM6 G 256 6x26 G.h4s6 N 316 G.h4s6.10
Hydrophobic TM6 G 256 6x26 G.h4s6 N 316 G.h4s6.10
Van-der-waals TM6 G 256 6x26 G.h4s6 N 316 G.h4s6.10
Polar TM6 R 261 6x31 G.H5 Y 354 G.H5.26
Hydrophobic TM6 R 261 6x31 G.H5 Y 354 G.H5.26
Van-der-waals TM6 R 261 6x31 G.H5 Y 354 G.H5.26
Polar TM5 C 230 5x66 G.H5 L 353 G.H5.25
Hydrophobic TM5 C 230 5x66 G.H5 L 353 G.H5.25
Van-der-waals TM5 C 230 5x66 G.H5 L 353 G.H5.25
Hydrophobic TM3 I 143 3x54 G.H5 C 351 G.H5.23
Van-der-waals TM3 I 143 3x54 G.H5 C 351 G.H5.23
Hydrophobic TM5 I 237 5x73 G.H5 Y 354 G.H5.26
Van-der-waals TM5 I 237 5x73 G.H5 Y 354 G.H5.26
Hydrophobic TM6 R 261 6x31 G.H5 G 352 G.H5.24
Van-der-waals TM6 R 261 6x31 G.H5 G 352 G.H5.24
Ionic TM5 R 241 5x77 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM5 C 230 5x66 G.H5 Y 354 G.H5.26
Hydrophobic TM6 D 260 6x30 G.H5 R 349 G.H5.21
Van-der-waals TM6 D 260 6x30 G.H5 R 349 G.H5.21
Polar TM3 R 139 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 139 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 139 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM6 A 264 6x34 G.H5 G 352 G.H5.24
Van-der-waals TM6 A 264 6x34 G.H5 G 352 G.H5.24
Hydrophobic ICL2 L 147 34x51 G.H5 T 340 G.H5.12
Hydrophobic TM5 R 240 5x76 G.S6 Y 320 G.S6.02
Van-der-waals TM5 R 240 5x76 G.S6 Y 320 G.S6.02
Polar TM6 D 260 6x30 G.H5 G 350 G.H5.22
Hydrophobic TM6 D 260 6x30 G.H5 G 350 G.H5.22
Van-der-waals TM6 D 260 6x30 G.H5 G 350 G.H5.22