Go - BB2 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 79.2

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.6
PAE mean: 15.9


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM2 N 73 2x37 G.H5 G 352 G.H5.24
Van-der-waals TM2 N 73 2x37 G.H5 G 352 G.H5.24
Polar TM6 V 252 6x23 G.H5 D 341 G.H5.13
Hydrophobic TM6 L 262 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 L 262 6x33 G.H5 L 353 G.H5.25
Polar TM6 H 251 6x22 G.S6 I 319 G.S6.01
Hydrophobic TM6 H 251 6x22 G.S6 I 319 G.S6.01
Van-der-waals TM6 H 251 6x22 G.S6 I 319 G.S6.01
Hydrophobic TM6 L 262 6x33 G.H5 C 351 G.H5.23
Van-der-waals TM6 L 262 6x33 G.H5 C 351 G.H5.23
Hydrophobic C-term Y 383 - H.hbhc T 117 H.hbhc.05
Van-der-waals C-term Y 383 - H.hbhc T 117 H.hbhc.05
Hydrophobic TM6 Q 255 6x26 G.H5 I 344 G.H5.16
Van-der-waals TM6 Q 255 6x26 G.H5 I 344 G.H5.16
Hydrophobic ICL2 H 152 34x57 G.HN I 28 G.HN.52
Ionic TM6 H 251 6x22 G.h4s6 E 318 G.h4s6.12
Polar TM6 H 251 6x22 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 H 251 6x22 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 H 251 6x22 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM3 A 141 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 A 141 3x53 G.H5 C 351 G.H5.23
Hydrophobic ICL2 M 146 34x51 G.H5 I 343 G.H5.15
Van-der-waals ICL2 M 146 34x51 G.H5 I 343 G.H5.15
Hydrophobic C-term Y 383 - H.HA V 72 H.HA.10
Hydrophobic ICL2 P 145 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 P 145 34x50 G.H5 I 344 G.H5.16
Hydrophobic TM6 T 265 6x36 G.H5 L 353 G.H5.25
Van-der-waals TM6 T 265 6x36 G.H5 L 353 G.H5.25
Hydrophobic TM6 R 259 6x30 G.H5 L 348 G.H5.20
Van-der-waals TM6 R 259 6x30 G.H5 L 348 G.H5.20
Hydrophobic ICL2 M 146 34x51 G.H5 T 340 G.H5.12
Ionic TM6 K 254 6x25 G.h4s6 E 318 G.h4s6.12
Polar TM6 K 254 6x25 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 K 254 6x25 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 K 254 6x25 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 L 262 6x33 G.H5 L 348 G.H5.20
Van-der-waals TM6 L 262 6x33 G.H5 L 348 G.H5.20
Polar TM3 R 138 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 138 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 138 3x50 G.H5 C 351 G.H5.23
Aromatic ICL2 H 152 34x57 G.HN K 24 G.HN.48
Hydrophobic ICL2 H 152 34x57 G.HN K 24 G.HN.48
Van-der-waals ICL2 H 152 34x57 G.HN K 24 G.HN.48
Aromatic TM6 H 251 6x22 G.S6 Y 320 G.S6.02
Hydrophobic TM6 H 251 6x22 G.S6 Y 320 G.S6.02
Van-der-waals TM6 H 251 6x22 G.S6 Y 320 G.S6.02
Hydrophobic TM6 S 258 6x29 G.H5 Y 354 G.H5.26
Van-der-waals TM6 S 258 6x29 G.H5 Y 354 G.H5.26
Hydrophobic TM2 P 75 2x39 G.H5 C 351 G.H5.23
Van-der-waals TM2 P 75 2x39 G.H5 C 351 G.H5.23
Hydrophobic ICL2 Q 149 34x54 G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 Q 149 34x54 G.hns1 K 32 G.hns1.03
Hydrophobic TM6 H 251 6x22 G.H5 D 341 G.H5.13
Van-der-waals TM6 H 251 6x22 G.H5 D 341 G.H5.13
Hydrophobic ICL2 S 151 34x56 G.HN G 27 G.HN.51
Hydrophobic H8 S 326 8x47 G.H5 L 353 G.H5.25
Hydrophobic TM6 S 258 6x29 G.H5 L 348 G.H5.20
Hydrophobic ICL2 S 151 34x56 G.HN I 28 G.HN.52
Van-der-waals ICL2 S 151 34x56 G.HN I 28 G.HN.52
Hydrophobic ICL2 M 146 34x51 G.H5 I 344 G.H5.16
Hydrophobic C-term Y 383 - H.HA P 71 H.HA.09
Van-der-waals C-term Y 383 - H.HA P 71 H.HA.09
Polar ICL2 P 145 34x50 G.H5 N 347 G.H5.19
Van-der-waals ICL2 P 145 34x50 G.H5 N 347 G.H5.19
Hydrophobic ICL2 I 148 34x53 G.H5 C 351 G.H5.23
Hydrophobic TM6 R 259 6x30 G.H5 I 344 G.H5.16
Hydrophobic TM3 R 138 3x50 G.H5 L 353 G.H5.25
Polar TM6 Q 255 6x26 G.H5 D 341 G.H5.13
Hydrophobic TM6 Q 255 6x26 G.H5 D 341 G.H5.13
Van-der-waals TM6 Q 255 6x26 G.H5 D 341 G.H5.13
Hydrophobic TM3 A 141 3x53 G.H5 L 348 G.H5.20
Hydrophobic ICL2 I 148 34x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 I 142 3x54 G.H5 L 348 G.H5.20
Polar TM2 N 73 2x37 G.H5 G 350 G.H5.22
Van-der-waals TM2 N 73 2x37 G.H5 G 350 G.H5.22
Hydrophobic ICL2 S 151 34x56 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 S 151 34x56 G.hns1 A 31 G.hns1.02
Hydrophobic TM6 Q 255 6x26 G.H5 L 348 G.H5.20
Hydrophobic ICL2 M 146 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 M 146 34x51 G.S3 L 195 G.S3.01