G13 - BB1 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 76.8

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 14.2


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar TM6 Q 257 6x26 G.h4s6 Q 339 G.h4s6.13
Hydrophobic TM5 S 242 5x68 G.H5 L 367 G.H5.16
Van-der-waals TM5 S 242 5x68 G.H5 L 367 G.H5.16
Hydrophobic ICL3 P 247 - G.H5 R 360 G.H5.09
Hydrophobic ICL2 M 149 34x51 G.H5 I 366 G.H5.15
Van-der-waals ICL2 M 149 34x51 G.H5 I 366 G.H5.15
Polar ICL2 D 150 34x52 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 D 150 34x52 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 D 150 34x52 G.hns1 R 47 G.hns1.03
Hydrophobic ICL3 G 248 - G.S6 Y 343 G.S6.02
Hydrophobic ICL3 P 247 - G.S6 Y 343 G.S6.02
Van-der-waals ICL3 P 247 - G.S6 Y 343 G.S6.02
Polar TM6 E 249 6x18 G.S6 L 342 G.S6.01
Hydrophobic TM6 E 249 6x18 G.H4 V 327 G.H4.12
Van-der-waals TM6 E 249 6x18 G.H4 V 327 G.H4.12
Hydrophobic ICL2 P 148 34x50 G.H5 L 367 G.H5.16
Polar TM5 S 242 5x68 G.H5 D 364 G.H5.13
Van-der-waals TM5 S 242 5x68 G.H5 D 364 G.H5.13
Hydrophobic ICL2 T 153 34x55 G.HN T 43 G.HN.52
Hydrophobic TM3 I 145 3x54 G.H5 L 374 G.H5.23
Polar H8 S 328 8x47 G.H5 M 375 G.H5.24
Hydrophobic H8 S 328 8x47 G.H5 M 375 G.H5.24
Van-der-waals H8 S 328 8x47 G.H5 M 375 G.H5.24
Hydrophobic TM3 A 144 3x53 G.H5 L 374 G.H5.23
Hydrophobic TM2 N 79 2x40 G.H5 L 376 G.H5.25
Van-der-waals TM2 N 79 2x40 G.H5 L 376 G.H5.25
Hydrophobic ICL2 S 154 34x56 G.hns1 K 46 G.hns1.02
Polar H8 S 328 8x47 G.H5 L 376 G.H5.25
Hydrophobic H8 S 328 8x47 G.H5 L 376 G.H5.25
Van-der-waals H8 S 328 8x47 G.H5 L 376 G.H5.25
Hydrophobic ICL2 T 153 34x55 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 T 153 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic TM5 L 239 5x65 G.H5 L 371 G.H5.20
Hydrophobic TM3 R 141 3x50 G.H5 L 374 G.H5.23
Ionic TM6 R 261 6x30 G.H5 D 364 G.H5.13
Polar TM6 R 261 6x30 G.H5 D 364 G.H5.13
Hydrophobic TM6 R 261 6x30 G.H5 D 364 G.H5.13
Van-der-waals TM6 R 261 6x30 G.H5 D 364 G.H5.13
Hydrophobic ICL2 T 153 34x55 G.hns1 K 46 G.hns1.02
Hydrophobic TM6 T 260 6x29 G.H5 M 375 G.H5.24
Van-der-waals TM6 T 260 6x29 G.H5 M 375 G.H5.24
Polar TM3 A 144 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 A 144 3x53 G.H5 N 370 G.H5.19
Van-der-waals TM3 A 144 3x53 G.H5 N 370 G.H5.19
Polar TM3 V 146 3x55 G.H5 K 363 G.H5.12
Van-der-waals TM3 V 146 3x55 G.H5 K 363 G.H5.12
Hydrophobic TM1 F 68 1x57 G.H5 L 376 G.H5.25
Van-der-waals TM1 F 68 1x57 G.H5 L 376 G.H5.25
Hydrophobic ICL2 M 149 34x51 G.H5 F 359 G.H5.08
Van-der-waals ICL2 M 149 34x51 G.H5 F 359 G.H5.08
Polar ICL2 P 148 34x50 G.H5 N 370 G.H5.19
Hydrophobic ICL2 P 148 34x50 G.H5 N 370 G.H5.19
Van-der-waals ICL2 P 148 34x50 G.H5 N 370 G.H5.19
Hydrophobic ICL2 M 149 34x51 G.S3 F 218 G.S3.03
Hydrophobic ICL2 Q 152 34x54 G.hns1 K 46 G.hns1.02
Van-der-waals ICL2 Q 152 34x54 G.hns1 K 46 G.hns1.02
Hydrophobic ICL3 P 247 - G.H5 D 361 G.H5.10
Van-der-waals ICL3 P 247 - G.H5 D 361 G.H5.10
Hydrophobic ICL2 P 148 34x50 G.H5 I 366 G.H5.15
Van-der-waals ICL2 P 148 34x50 G.H5 I 366 G.H5.15
Polar ICL2 S 154 34x56 G.HN T 43 G.HN.52
Hydrophobic ICL2 S 154 34x56 G.HN T 43 G.HN.52
Van-der-waals ICL2 S 154 34x56 G.HN T 43 G.HN.52
Ionic TM6 E 249 6x18 G.S6 H 344 G.S6.03
Polar TM6 E 249 6x18 G.S6 H 344 G.S6.03
Hydrophobic TM6 E 249 6x18 G.S6 H 344 G.S6.03
Van-der-waals TM6 E 249 6x18 G.S6 H 344 G.S6.03
Hydrophobic H8 S 330 8x49 G.H5 Q 377 G.H5.26
Hydrophobic ICL2 M 149 34x51 G.S3 V 216 G.S3.01
Polar TM6 Q 257 6x26 G.H5 H 368 G.H5.17
Hydrophobic TM6 Q 257 6x26 G.H5 H 368 G.H5.17
Van-der-waals TM6 Q 257 6x26 G.H5 H 368 G.H5.17
Polar H8 E 329 8x48 G.H5 L 376 G.H5.25
Hydrophobic TM3 I 145 3x54 G.H5 L 371 G.H5.20
Hydrophobic ICL2 S 154 34x56 G.HN K 42 G.HN.51
Van-der-waals ICL2 S 154 34x56 G.HN K 42 G.HN.51
Ionic TM6 E 249 6x18 G.H4 R 331 G.H4.16
Polar TM6 E 249 6x18 G.H4 R 331 G.H4.16
Hydrophobic TM6 E 249 6x18 G.H4 R 331 G.H4.16
Van-der-waals TM6 E 249 6x18 G.H4 R 331 G.H4.16
Polar TM6 H 253 6x22 G.h4s6 Q 339 G.h4s6.13
Hydrophobic TM6 H 253 6x22 G.h4s6 Q 339 G.h4s6.13
Van-der-waals TM6 H 253 6x22 G.h4s6 Q 339 G.h4s6.13
Hydrophobic ICL2 M 151 34x53 G.H5 N 370 G.H5.19
Van-der-waals ICL2 M 151 34x53 G.H5 N 370 G.H5.19
Hydrophobic TM6 L 264 6x33 G.H5 M 375 G.H5.24
Van-der-waals TM6 L 264 6x33 G.H5 M 375 G.H5.24
Polar H8 S 330 8x49 G.H5 L 376 G.H5.25
Hydrophobic H8 S 330 8x49 G.H5 L 376 G.H5.25
Van-der-waals H8 S 330 8x49 G.H5 L 376 G.H5.25
Hydrophobic TM3 I 145 3x54 G.H5 L 367 G.H5.16
Van-der-waals TM3 I 145 3x54 G.H5 L 367 G.H5.16
Hydrophobic ICL3 P 247 - G.H5 D 364 G.H5.13
Van-der-waals ICL3 P 247 - G.H5 D 364 G.H5.13
Hydrophobic ICL2 P 148 34x50 G.H5 K 363 G.H5.12
Van-der-waals ICL2 P 148 34x50 G.H5 K 363 G.H5.12
Hydrophobic ICL2 M 149 34x51 G.H5 K 363 G.H5.12
Hydrophobic TM6 L 264 6x33 G.H5 L 371 G.H5.20
Hydrophobic TM6 R 261 6x30 G.H5 L 371 G.H5.20
Hydrophobic TM2 P 78 2x39 G.H5 L 374 G.H5.23
Van-der-waals TM2 P 78 2x39 G.H5 L 374 G.H5.23
Polar ICL2 Q 152 34x54 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 Q 152 34x54 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 Q 152 34x54 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 M 149 34x51 G.S1 V 49 G.S1.02