Gz - Olfactory receptor 51Q1 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 82.8

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.3
PAE mean: 22.5


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL2 P 131 34x50 G.H5 I 345 G.H5.16
Van-der-waals ICL2 P 131 34x50 G.H5 I 345 G.H5.16
Polar ICL2 L 132 34x51 G.H5 D 342 G.H5.13
Hydrophobic ICL2 L 132 34x51 G.H5 D 342 G.H5.13
Van-der-waals ICL2 L 132 34x51 G.H5 D 342 G.H5.13
Hydrophobic ICL2 L 132 34x51 G.H5 I 345 G.H5.16
Van-der-waals ICL2 L 132 34x51 G.H5 I 345 G.H5.16
Hydrophobic ICL2 L 132 34x51 G.H5 D 338 G.H5.09
Van-der-waals ICL2 L 132 34x51 G.H5 D 338 G.H5.09
Hydrophobic TM2 Q 59 2x37 G.H5 L 349 G.H5.20
Hydrophobic TM2 Y 62 2x40 G.H5 L 354 G.H5.25
Van-der-waals TM2 Y 62 2x40 G.H5 L 354 G.H5.25
Hydrophobic TM2 Q 59 2x37 G.H5 I 352 G.H5.23
Van-der-waals TM2 Q 59 2x37 G.H5 I 352 G.H5.23
Ionic TM6 R 238 6x32 G.h4s6 E 319 G.h4s6.12
Polar TM6 R 238 6x32 G.h4s6 E 319 G.h4s6.12
Van-der-waals TM6 R 238 6x32 G.h4s6 E 319 G.h4s6.12
Hydrophobic TM2 Y 62 2x40 G.H5 I 352 G.H5.23
Van-der-waals TM2 Y 62 2x40 G.H5 I 352 G.H5.23
Polar ICL2 H 133 34x52 G.s2s3 K 193 G.s2s3.01
Hydrophobic TM2 M 61 2x39 G.H5 L 354 G.H5.25
Van-der-waals TM2 M 61 2x39 G.H5 L 354 G.H5.25
Polar ICL1 H 58 12x51 G.hns1 R 31 G.hns1.02
Aromatic ICL1 H 58 12x51 G.hns1 R 31 G.hns1.02
Hydrophobic ICL1 H 58 12x51 G.hns1 R 31 G.hns1.02
Van-der-waals ICL1 H 58 12x51 G.hns1 R 31 G.hns1.02
Hydrophobic TM6 H 246 6x40 G.H5 C 355 G.H5.26
Hydrophobic ICL2 S 136 34x55 G.s2s3 E 194 G.s2s3.02
Hydrophobic ICL2 L 132 34x51 G.s2s3 K 193 G.s2s3.01
Van-der-waals ICL2 L 132 34x51 G.s2s3 K 193 G.s2s3.01
Hydrophobic ICL2 Y 134 34x53 G.H5 L 349 G.H5.20
Van-der-waals ICL2 Y 134 34x53 G.H5 L 349 G.H5.20
Hydrophobic TM2 M 61 2x39 G.H5 C 355 G.H5.26
Van-der-waals TM2 M 61 2x39 G.H5 C 355 G.H5.26
Hydrophobic TM2 M 61 2x39 G.H5 I 352 G.H5.23
Van-der-waals TM2 M 61 2x39 G.H5 I 352 G.H5.23
Hydrophobic ICL2 P 131 34x50 G.H5 D 342 G.H5.13
Van-der-waals ICL2 P 131 34x50 G.H5 D 342 G.H5.13
Polar TM6 S 245 6x39 G.H5 G 353 G.H5.24
Hydrophobic H8 I 301 8x50 G.H5 L 354 G.H5.25
Hydrophobic TM2 L 65 2x43 G.H5 L 354 G.H5.25
Van-der-waals TM2 L 65 2x43 G.H5 L 354 G.H5.25
Polar TM6 R 238 6x32 G.h4s6 E 316 G.h4s6.09
Van-der-waals TM6 R 238 6x32 G.h4s6 E 316 G.h4s6.09
Hydrophobic TM7 Y 294 7x53 G.H5 L 354 G.H5.25
Polar TM1 E 54 1x60 G.hns1 R 31 G.hns1.02
Hydrophobic TM1 E 54 1x60 G.hns1 R 31 G.hns1.02
Van-der-waals TM1 E 54 1x60 G.hns1 R 31 G.hns1.02
Van-der-waals TM4 N 140 4x39 G.hns1 R 32 G.hns1.03
Hydrophobic TM6 N 242 6x36 G.H5 C 355 G.H5.26
Van-der-waals TM6 N 242 6x36 G.H5 C 355 G.H5.26
Hydrophobic TM3 A 127 3x53 G.H5 L 349 G.H5.20
Polar ICL1 S 56 12x49 G.hns1 R 31 G.hns1.02
Hydrophobic ICL1 S 56 12x49 G.hns1 R 31 G.hns1.02
Van-der-waals ICL1 S 56 12x49 G.hns1 R 31 G.hns1.02
Polar TM6 C 243 6x37 G.H5 C 355 G.H5.26
Hydrophobic TM6 C 243 6x37 G.H5 C 355 G.H5.26
Van-der-waals TM6 C 243 6x37 G.H5 C 355 G.H5.26
Hydrophobic ICL2 P 131 34x50 G.H5 Q 346 G.H5.17
Van-der-waals ICL2 P 131 34x50 G.H5 Q 346 G.H5.17
Hydrophobic ICL2 Y 134 34x53 G.H5 I 345 G.H5.16
Polar ICL1 P 55 12x48 G.hns1 R 31 G.hns1.02
Hydrophobic ICL1 P 55 12x48 G.hns1 R 31 G.hns1.02
Van-der-waals ICL1 P 55 12x48 G.hns1 R 31 G.hns1.02
Van-der-waals ICL1 V 57 12x50 G.hns1 R 31 G.hns1.02
Van-der-waals H8 N 298 8x47 G.H5 L 354 G.H5.25
Polar TM2 Q 59 2x37 G.H5 N 348 G.H5.19
Hydrophobic TM2 Q 59 2x37 G.H5 N 348 G.H5.19
Van-der-waals TM2 Q 59 2x37 G.H5 N 348 G.H5.19
Hydrophobic ICL2 A 135 34x54 G.H5 I 345 G.H5.16
Hydrophobic ICL2 A 135 34x54 G.S3 L 195 G.S3.01
Van-der-waals ICL2 A 135 34x54 G.S3 L 195 G.S3.01
Hydrophobic TM3 C 124 3x50 G.H5 C 355 G.H5.26
Van-der-waals TM3 C 124 3x50 G.H5 C 355 G.H5.26
Polar H8 N 298 8x47 G.H5 I 352 G.H5.23
Hydrophobic H8 N 298 8x47 G.H5 I 352 G.H5.23
Van-der-waals H8 N 298 8x47 G.H5 I 352 G.H5.23
Hydrophobic TM6 N 242 6x36 G.H5 K 350 G.H5.21
Van-der-waals TM6 N 242 6x36 G.H5 K 350 G.H5.21
Hydrophobic ICL1 P 55 12x48 G.HN S 27 G.HN.51
Van-der-waals ICL1 P 55 12x48 G.HN S 27 G.HN.51
Hydrophobic TM3 A 127 3x53 G.H5 C 355 G.H5.26
Hydrophobic TM4 T 139 4x38 G.s2s3 E 194 G.s2s3.02
Van-der-waals TM4 T 139 4x38 G.s2s3 E 194 G.s2s3.02
Hydrophobic TM6 R 238 6x32 G.H5 K 350 G.H5.21
Hydrophobic ICL2 L 132 34x51 G.H5 T 341 G.H5.12
Van-der-waals ICL2 L 132 34x51 G.H5 T 341 G.H5.12