Go - OPN5 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 79.9

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.6
PAE mean: 14.9


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM5 V 233 5x72 G.S6 Y 320 G.S6.02
Van-der-waals TM5 V 233 5x72 G.S6 Y 320 G.S6.02
Hydrophobic TM3 I 135 3x54 G.H5 I 344 G.H5.16
Hydrophobic TM6 E 247 6x30 G.H5 Y 354 G.H5.26
Van-der-waals TM6 E 247 6x30 G.H5 Y 354 G.H5.26
Hydrophobic TM3 K 134 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 K 134 3x53 G.H5 C 351 G.H5.23
Hydrophobic ICL2 W 143 34x55 G.HN I 28 G.HN.52
Van-der-waals ICL2 W 143 34x55 G.HN I 28 G.HN.52
Hydrophobic TM5 E 232 5x71 G.H5 D 337 G.H5.09
Hydrophobic TM5 V 233 5x72 G.H5 A 338 G.H5.10
Hydrophobic TM2 A 68 2x39 G.H5 C 351 G.H5.23
Polar TM6 E 247 6x30 G.H5 A 345 G.H5.17
Hydrophobic TM6 E 247 6x30 G.H5 A 345 G.H5.17
Van-der-waals TM6 E 247 6x30 G.H5 A 345 G.H5.17
Hydrophobic ICL2 V 142 34x54 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 V 142 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic TM6 L 250 6x33 G.H5 Y 354 G.H5.26
Van-der-waals TM6 L 250 6x33 G.H5 Y 354 G.H5.26
Hydrophobic TM5 K 225 5x64 G.H5 I 344 G.H5.16
Polar TM5 S 229 5x68 G.H5 D 341 G.H5.13
Van-der-waals TM5 S 229 5x68 G.H5 D 341 G.H5.13
Hydrophobic TM6 A 254 6x37 G.H5 L 353 G.H5.25
Van-der-waals TM6 A 254 6x37 G.H5 L 353 G.H5.25
Hydrophobic TM4 K 145 4x38 G.HN I 28 G.HN.52
Van-der-waals TM4 K 145 4x38 G.HN I 28 G.HN.52
Polar TM4 K 145 4x38 G.HN G 27 G.HN.51
Ionic TM6 R 239 6x22 G.H4 E 309 G.H4.16
Polar TM6 R 239 6x22 G.H4 E 309 G.H4.16
Hydrophobic TM6 R 239 6x22 G.H4 E 309 G.H4.16
Van-der-waals TM6 R 239 6x22 G.H4 E 309 G.H4.16
Van-der-waals TM6 T 251 6x34 G.H5 L 348 G.H5.20
Polar ICL3 D 237 - G.H4 Q 305 G.H4.12
Hydrophobic ICL3 D 237 - G.H4 Q 305 G.H4.12
Van-der-waals ICL3 D 237 - G.H4 Q 305 G.H4.12
Hydrophobic TM6 I 240 6x23 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 I 240 6x23 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 L 246 6x29 G.H5 Y 354 G.H5.26
Hydrophobic TM5 V 233 5x72 G.H5 D 341 G.H5.13
Hydrophobic ICL2 L 138 34x50 G.S3 L 195 G.S3.01
Van-der-waals ICL2 L 138 34x50 G.S3 L 195 G.S3.01
Polar TM3 R 131 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 131 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 131 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM6 E 247 6x30 G.H5 L 348 G.H5.20
Van-der-waals TM6 E 247 6x30 G.H5 L 348 G.H5.20
Hydrophobic TM5 V 233 5x72 G.H5 D 337 G.H5.09
Van-der-waals TM5 V 233 5x72 G.H5 D 337 G.H5.09
Hydrophobic ICL3 F 236 - G.H5 A 338 G.H5.10
Van-der-waals ICL3 F 236 - G.H5 A 338 G.H5.10
Hydrophobic TM5 S 229 5x68 G.H5 I 344 G.H5.16
Van-der-waals TM5 S 229 5x68 G.H5 I 344 G.H5.16
Hydrophobic TM3 I 135 3x54 G.H5 N 347 G.H5.19
Hydrophobic ICL3 F 236 - G.H5 V 334 G.H5.06
Van-der-waals ICL3 F 236 - G.H5 V 334 G.H5.06
Hydrophobic ICL3 F 236 - G.S6 Y 320 G.S6.02
Van-der-waals ICL3 F 236 - G.S6 Y 320 G.S6.02
Hydrophobic TM5 V 226 5x65 G.H5 I 344 G.H5.16
Hydrophobic ICL2 L 138 34x50 G.H5 I 343 G.H5.15
Van-der-waals ICL2 L 138 34x50 G.H5 I 343 G.H5.15
Hydrophobic ICL3 F 236 - G.S6 H 322 G.S6.04
Aromatic H8 F 313 8x50 G.H5 Y 354 G.H5.26
Hydrophobic H8 F 313 8x50 G.H5 Y 354 G.H5.26
Van-der-waals H8 F 313 8x50 G.H5 Y 354 G.H5.26
Ionic TM6 H 244 6x27 G.H5 D 341 G.H5.13
Polar TM6 H 244 6x27 G.H5 D 341 G.H5.13
Hydrophobic TM6 H 244 6x27 G.H5 D 341 G.H5.13
Van-der-waals TM6 H 244 6x27 G.H5 D 341 G.H5.13
Polar TM6 S 243 6x26 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 S 243 6x26 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 S 243 6x26 G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL2 L 138 34x50 G.H5 T 340 G.H5.12
Hydrophobic TM6 L 250 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 L 250 6x33 G.H5 L 353 G.H5.25
Hydrophobic ICL2 W 143 34x55 G.hns1 K 32 G.hns1.03
Hydrophobic ICL3 F 236 - G.S6 C 321 G.S6.03
Van-der-waals ICL3 F 236 - G.S6 C 321 G.S6.03
Hydrophobic TM7 I 309 7x56 G.H5 G 352 G.H5.24
Van-der-waals TM7 I 309 7x56 G.H5 G 352 G.H5.24
Hydrophobic TM5 V 226 5x65 G.H5 L 348 G.H5.20
Polar TM6 S 243 6x26 G.H5 Y 354 G.H5.26
Van-der-waals TM6 S 243 6x26 G.H5 Y 354 G.H5.26
Polar TM3 K 134 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 K 134 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 K 134 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 R 131 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 131 3x50 G.H5 L 353 G.H5.25
Hydrophobic ICL2 L 138 34x50 G.H5 I 344 G.H5.16
Hydrophobic TM6 I 240 6x23 G.S6 Y 320 G.S6.02
Van-der-waals TM6 I 240 6x23 G.S6 Y 320 G.S6.02
Hydrophobic TM3 I 135 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 135 3x54 G.H5 L 348 G.H5.20