G12 - CXCR2 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 84.4

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.7
PAE mean: 15.2


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic C-term P 346 - G.H3 K 284 G.H3.16
Van-der-waals C-term P 346 - G.H3 K 284 G.H3.16
Polar ICL2 R 153 34x52 G.H5 N 374 G.H5.19
Hydrophobic ICL2 R 153 34x52 G.H5 N 374 G.H5.19
Van-der-waals ICL2 R 153 34x52 G.H5 N 374 G.H5.19
Hydrophobic ICL3 M 243 - G.H5 D 368 G.H5.13
Van-der-waals ICL3 M 243 - G.H5 D 368 G.H5.13
Hydrophobic TM5 A 241 5x68 G.H5 D 368 G.H5.13
Polar ICL3 H 242 - G.H5 D 368 G.H5.13
Van-der-waals ICL3 H 242 - G.H5 D 368 G.H5.13
Hydrophobic TM3 I 148 3x54 G.H5 L 375 G.H5.20
Van-der-waals TM3 I 148 3x54 G.H5 L 375 G.H5.20
Polar C-term T 359 - G.H2 R 235 G.H2.04
Hydrophobic C-term T 359 - G.H2 R 235 G.H2.04
Van-der-waals C-term T 359 - G.H2 R 235 G.H2.04
Hydrophobic C-term L 360 - G.H2 W 238 G.H2.07
Van-der-waals C-term L 360 - G.H2 W 238 G.H2.07
Hydrophobic TM5 A 241 5x68 G.H5 L 371 G.H5.16
Hydrophobic TM6 V 252 6x36 G.H5 M 379 G.H5.24
Van-der-waals TM6 V 252 6x36 G.H5 M 379 G.H5.24
Hydrophobic ICL3 M 243 - G.H5 Q 372 G.H5.17
Van-der-waals ICL3 M 243 - G.H5 Q 372 G.H5.17
Hydrophobic TM3 I 148 3x54 G.H5 M 379 G.H5.24
Hydrophobic ICL3 M 243 - G.H5 L 371 G.H5.16
Van-der-waals ICL3 M 243 - G.H5 L 371 G.H5.16
Polar C-term L 360 - G.s3h2 G 230 G.s3h2.02
Van-der-waals C-term L 360 - G.s3h2 G 230 G.s3h2.02
Polar H8 Q 319 8x48 G.H5 L 380 G.H5.25
Van-der-waals H8 Q 319 8x48 G.H5 L 380 G.H5.25
Hydrophobic TM6 A 249 6x33 G.H5 L 380 G.H5.25
Polar TM3 R 144 3x50 G.H5 I 378 G.H5.23
Hydrophobic TM3 R 144 3x50 G.H5 I 378 G.H5.23
Van-der-waals TM3 R 144 3x50 G.H5 I 378 G.H5.23
Hydrophobic TM3 R 144 3x50 G.H5 M 379 G.H5.24
Hydrophobic C-term T 359 - G.s3h2 Q 231 G.s3h2.03
Polar TM3 A 147 3x53 G.H5 N 374 G.H5.19
Hydrophobic TM3 A 147 3x53 G.H5 N 374 G.H5.19
Van-der-waals TM3 A 147 3x53 G.H5 N 374 G.H5.19
Hydrophobic C-term L 360 - G.H3 I 276 G.H3.08
Van-der-waals C-term L 360 - G.H3 I 276 G.H3.08
Hydrophobic TM6 R 248 6x32 G.H5 L 380 G.H5.25
Hydrophobic TM5 L 238 5x65 G.H5 L 371 G.H5.16
Hydrophobic TM3 I 148 3x54 G.H5 L 371 G.H5.16
Van-der-waals TM3 I 148 3x54 G.H5 L 371 G.H5.16
Polar ICL2 T 156 34x55 G.hns1 R 55 G.hns1.02
Hydrophobic ICL2 T 156 34x55 G.hns1 R 55 G.hns1.02
Van-der-waals ICL2 T 156 34x55 G.hns1 R 55 G.hns1.02
Hydrophobic H8 Q 319 8x48 G.H5 Q 381 G.H5.26
Van-der-waals H8 Q 319 8x48 G.H5 Q 381 G.H5.26
Polar ICL2 Q 157 34x56 G.HN R 52 G.HN.52
Hydrophobic ICL2 Q 157 34x56 G.HN R 52 G.HN.52
Van-der-waals ICL2 Q 157 34x56 G.HN R 52 G.HN.52
Polar C-term T 358 - G.H2 R 232 G.H2.01
Hydrophobic C-term T 358 - G.H2 R 232 G.H2.01
Van-der-waals C-term T 358 - G.H2 R 232 G.H2.01
Polar C-term S 353 - G.H2 Q 234 G.H2.03
Hydrophobic C-term S 353 - G.H2 Q 234 G.H2.03
Van-der-waals C-term S 353 - G.H2 Q 234 G.H2.03
Hydrophobic TM6 I 253 6x37 G.H5 M 379 G.H5.24
Van-der-waals TM6 I 253 6x37 G.H5 M 379 G.H5.24
Polar ICL2 A 151 34x50 G.H5 N 374 G.H5.19
Polar H8 K 320 8x49 G.H5 Q 381 G.H5.26
Hydrophobic H8 K 320 8x49 G.H5 Q 381 G.H5.26
Van-der-waals H8 K 320 8x49 G.H5 Q 381 G.H5.26
Hydrophobic ICL2 A 151 34x50 G.H5 I 370 G.H5.15
Van-der-waals ICL2 A 151 34x50 G.H5 I 370 G.H5.15
Hydrophobic TM6 A 249 6x33 G.H5 L 375 G.H5.20
Van-der-waals TM6 A 249 6x33 G.H5 L 375 G.H5.20
Hydrophobic ICL2 Q 157 34x56 G.hns1 R 55 G.hns1.02
Van-der-waals ICL2 Q 157 34x56 G.hns1 R 55 G.hns1.02
Hydrophobic C-term T 359 - G.s3h2 G 230 G.s3h2.02
Hydrophobic C-term S 357 - G.H2 S 233 G.H2.02
Polar C-term S 347 - G.H3 K 284 G.H3.16
Van-der-waals C-term S 347 - G.H3 K 284 G.H3.16
Hydrophobic TM5 T 237 5x64 G.H5 L 371 G.H5.16
Van-der-waals TM5 T 237 5x64 G.H5 L 371 G.H5.16
Hydrophobic TM6 Q 245 6x29 G.H5 K 376 G.H5.21
Van-der-waals TM6 Q 245 6x29 G.H5 K 376 G.H5.21
Hydrophobic TM5 L 238 5x65 G.H5 L 375 G.H5.20
Van-der-waals TM5 L 238 5x65 G.H5 L 375 G.H5.20
Polar C-term T 359 - G.s4h3 E 263 G.s4h3.10
Polar ICL2 R 153 34x52 G.H5 E 373 G.H5.18
Polar C-term T 358 - G.H2 R 235 G.H2.04
Hydrophobic C-term T 358 - G.H2 R 235 G.H2.04
Van-der-waals C-term T 358 - G.H2 R 235 G.H2.04
Hydrophobic H8 G 318 8x47 G.H5 Q 381 G.H5.26
Van-der-waals H8 G 318 8x47 G.H5 Q 381 G.H5.26
Van-der-waals C-term L 360 - G.H1 K 70 G.H1.01
Hydrophobic C-term S 353 - G.H2 Q 236 G.H2.05
Hydrophobic TM6 K 246 6x30 G.H5 L 375 G.H5.20
Hydrophobic H8 G 318 8x47 G.H5 L 380 G.H5.25
Hydrophobic C-term F 348 - G.H3 L 285 G.H3.17
Van-der-waals C-term F 348 - G.H3 L 285 G.H3.17
Ionic ICL2 R 153 34x52 G.H5 D 377 G.H5.22
Polar ICL2 R 153 34x52 G.H5 D 377 G.H5.22
Van-der-waals ICL2 R 153 34x52 G.H5 D 377 G.H5.22
Hydrophobic TM6 A 249 6x33 G.H5 M 379 G.H5.24
Polar C-term L 360 - G.s3h2 Q 231 G.s3h2.03
Van-der-waals C-term L 360 - G.s3h2 Q 231 G.s3h2.03
Hydrophobic C-term L 360 - G.S1 L 63 G.S1.07
Polar C-term T 358 - G.H3 E 272 G.H3.04
Hydrophobic C-term T 358 - G.H3 E 272 G.H3.04
Van-der-waals C-term T 358 - G.H3 E 272 G.H3.04
Hydrophobic TM6 Q 245 6x29 G.H5 L 380 G.H5.25
Van-der-waals TM6 Q 245 6x29 G.H5 L 380 G.H5.25
Polar C-term T 359 - G.H2 R 232 G.H2.01
Hydrophobic C-term T 359 - G.H2 R 232 G.H2.01
Van-der-waals C-term T 359 - G.H2 R 232 G.H2.01
Hydrophobic TM3 A 147 3x53 G.H5 I 378 G.H5.23
Van-der-waals TM3 A 147 3x53 G.H5 I 378 G.H5.23
Aromatic C-term F 348 - G.H3 K 284 G.H3.16
Hydrophobic C-term F 348 - G.H3 K 284 G.H3.16
Van-der-waals C-term F 348 - G.H3 K 284 G.H3.16
Polar C-term S 351 - G.H2 Q 236 G.H2.05
Van-der-waals C-term S 351 - G.H2 Q 236 G.H2.05
Hydrophobic TM6 Q 245 6x29 G.H5 L 375 G.H5.20
Hydrophobic C-term L 360 - G.H2 R 235 G.H2.04
Van-der-waals C-term L 360 - G.H2 R 235 G.H2.04
Van-der-waals H8 F 321 8x50 G.H5 Q 381 G.H5.26
Hydrophobic C-term L 360 - G.s1h1 G 64 G.s1h1.01
Van-der-waals C-term L 360 - G.s1h1 G 64 G.s1h1.01
Van-der-waals C-term F 348 - G.H3 N 283 G.H3.15
Ionic H8 K 320 8x49 G.H5 D 377 G.H5.22
Polar H8 K 320 8x49 G.H5 D 377 G.H5.22
Van-der-waals H8 K 320 8x49 G.H5 D 377 G.H5.22